DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.036e-23
Identity = 56/150 (37.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K  + + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNGLSFIET 153          

HSP 2 Score: 20.7866 bits (42), Expect = 2.036e-23
Identity = 10/31 (32.26%), Postives = 16/31 (51.61%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQI 661
            +  SA +  NVE AFQ I     +   ++Q+
Sbjct:  151 IETSALDSTNVEAAFQTILTEIYRIVSQKQM 181          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.036e-23
Identity = 56/150 (37.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K  + + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNGLSFIET 153          

HSP 2 Score: 20.7866 bits (42), Expect = 2.036e-23
Identity = 10/31 (32.26%), Postives = 16/31 (51.61%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQI 661
            +  SA +  NVE AFQ I     +   ++Q+
Sbjct:  151 IETSALDSTNVEAAFQTILTEIYRIVSQKQM 181          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.036e-23
Identity = 56/150 (37.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K  + + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNGLSFIET 153          

HSP 2 Score: 20.7866 bits (42), Expect = 2.036e-23
Identity = 10/31 (32.26%), Postives = 16/31 (51.61%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQI 661
            +  SA +  NVE AFQ I     +   ++Q+
Sbjct:  151 IETSALDSTNVEAAFQTILTEIYRIVSQKQM 181          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.041e-23
Identity = 58/153 (37.91%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    A     +N   +++GNK D+     RVVS   A+ +  S G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYAC----ENVNKLLVGNKSDLTA--KRVVSTDAAKEFAESLG-IEFLETSAK 153          

HSP 2 Score: 22.3274 bits (46), Expect = 2.041e-23
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALK 640
            L  SAK   NVE+AF  +A    K
Sbjct:  148 LETSAKNAANVEKAFMMMAAQIKK 171          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.203e-23
Identity = 56/150 (37.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K  + + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNGLSFIET 153          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.655e-23
Identity = 59/153 (38.56%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGK+ L+ ++ +  +   Y +TIG DF  + V+ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    AS    DN   +++GNK D+    +R +  + A+A+ A +  IP+ ET  K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYAS----DNVNKLLVGNKSDLT--ENRAIPYETAKAF-ADEIGIPFMETSAK 153          

HSP 2 Score: 21.557 bits (44), Expect = 2.655e-23
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIA 625
            +  SAK+  NVE+AF  ++
Sbjct:  148 METSAKDATNVEQAFMAMS 166          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.655e-23
Identity = 57/153 (37.25%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDS VGK+ L+ ++ +  + + Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD   M+SF+N+  W  E    A+    ++   +++GNK D+    S+VVS +  RA  A +  IP+ ET  K
Sbjct:    8 LFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYAN----ESVCKLLIGNKNDM--VESKVVSTETGRA-LADELGIPFLETSAK 153          

HSP 2 Score: 25.409 bits (54), Expect = 2.655e-23
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIA 625
            L  SAK+ INVE+AF  IA
Sbjct:  148 LETSAKDSINVEQAFLTIA 166          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.659e-23
Identity = 59/144 (40.97%), Postives = 80/144 (55.56%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNI 561
            LKV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAGQERF SL   +YRG+   V+VYD+    SF  L  W +E         P+N    + GNK D+   + R V  K A+ +  S G I
Sbjct:    6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL----KEHGPENIVMAIAGNKCDL--SDIREVPLKDAKEYAESIGAI 143          

HSP 2 Score: 24.6386 bits (52), Expect = 2.659e-23
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  563 LTLRPSAKEGINVEEAFQCIAK 628
            + +  SAK  IN+EE FQ I++
Sbjct:  143 IVVETSAKNAINIEELFQGISR 164          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.448e-23
Identity = 58/151 (38.41%), Postives = 88/151 (58.28%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D+     R V  + A+ + A   ++ + ET  K
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASP----NIVIALAGNKADL--ATKRAVDFQDAQTY-ADDNSLLFMETSAK 166          

HSP 2 Score: 24.2534 bits (51), Expect = 3.448e-23
Identity = 12/27 (44.44%), Postives = 15/27 (55.56%), Query Frame = 2
Query:  563 LTLRPSAKEGINVEEAFQCIAKNALKS 643
            L +  SAK  +NV E F  IAK   K+
Sbjct:  159 LFMETSAKTAMNVNEIFMAIAKKLPKN 185          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23
Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    D    +++GNK D+D   +RVV+ ++  A     G +P+ E+  K
Sbjct:   19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHAN----DEAQLLLVGNKSDMD---TRVVTYEQGEALAKELG-LPFIESSAK 164          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_HUMAN2.036e-2337.33Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK2.036e-2337.33Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA2.036e-2337.33Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
YPT1_PHYIN2.041e-2337.91Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RB11A_BOVIN2.203e-2337.33Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RBD2A_ARATH2.655e-2338.56Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RABD1_ARATH2.655e-2337.25Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB31_HUMAN2.659e-2340.97Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAB5C_CHICK3.448e-2338.41Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
SEC4_CANGA3.757e-2337.66Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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