DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23
Identity = 50/122 (40.98%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 492
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  +D++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N+  W +E      P    N   +++GNK D+
Sbjct:   13 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDP----NIVVMLVGNKSDL 130          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.907e-23
Identity = 54/147 (36.73%), Postives = 92/147 (62.59%), Query Frame = 1
Query:  115 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKG 555
            R   L K++++GDS VGK++L+++Y   +FS   KATIG +F T+ ++ E +    QIWDTAGQERF+++  A+YRGA   ++VYD+    +F+++  W +E  I +  +       +++GNK D++  N R VS ++ +A    +G
Sbjct:    8 REEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTT----VARMLVGNKCDLE--NIRAVSVEEGKALAEEEG 148          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.838e-23
Identity = 54/150 (36.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +L YD+   ++FDN+  W  E           N   ++ GNK D+   + R VSE+  +A    +G + + ET
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLREL----RDHRDSNIVIILAGNKSDLK--HLRAVSEQDDQALVKKEG-LSFLET 154          

HSP 2 Score: 23.483 bits (49), Expect = 5.838e-23
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  551 KEIFLTLRPSAKEGINVEEAFQCI 622
            KE    L  SA E +NV++AFQ I
Sbjct:  146 KEGLSFLETSALEALNVDKAFQTI 169          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.844e-23
Identity = 58/152 (38.16%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFT-LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            K+++LGDS VGK+SL+ ++V  +F +  ++TIGA FLT+ +  ++     L+IWDTAGQER++SL   +YR A+C ++VYD+    S +   +W +E   QA    P+     + GNK+D+     R V +  A A+ A++ N+ +FET  K
Sbjct:   16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA----PEGIVIALAGNKLDL-AQERRAVEKADAEAY-AAEANLLFFETSAK 161          

HSP 2 Score: 20.7866 bits (42), Expect = 5.844e-23
Identity = 11/22 (50.00%), Postives = 11/22 (50.00%), Query Frame = 2
Query:  563 LTLRPSAKEGINVEEAFQCIAK 628
            L    SAK   NV E F  IAK
Sbjct:  154 LFFETSAKTAENVNELFTAIAK 175          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.409e-23
Identity = 58/154 (37.66%), Postives = 93/154 (60.39%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            +++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    D    +++GNK D++   +RVV+  +  A     G IP+ E+  K
Sbjct:   19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDME---TRVVTADQGEALAKELG-IPFIESSAK 164          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.615e-23
Identity = 57/153 (37.25%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L+K++++GDSGVGK+ L+ ++    F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +L+YDV   KSFDN+  W       AS    +N   +++GNK D +  + R VS ++ +A  A +  + + E   K
Sbjct:    9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS----ENVYKILIGNKCDCE--DQRQVSFEQGQA-LADELGVKFLEASAK 154          

HSP 2 Score: 24.2534 bits (51), Expect = 7.615e-23
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALK 640
            L  SAK  +NV+EAF  +A+   K
Sbjct:  149 LEASAKTNVNVDEAFFTLAREIKK 172          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.615e-23
Identity = 56/154 (36.36%), Postives = 93/154 (60.39%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKR 588
            L K++++GDSGVGK+ L+ ++ +  +S  + +TIG DF  + ++   +   LQIWDTAGQERF+++  ++YRGA   ++VYDV    +F+N+  W +E    A     +N   +++GNK D+     +VV    A+A+ A    IP+ ET  K+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFAC----ENVNKLLVGNKSDLVA--KKVVDFNTAKAF-ADSLQIPFLETSAKQ 154          

HSP 2 Score: 25.0238 bits (53), Expect = 7.615e-23
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIA---KNALKSGEEEQ 658
            L  SAK+  NVE+AF  +A   KN L + +  Q
Sbjct:  148 LETSAKQSTNVEQAFMTMATEIKNRLTASQPTQ 180          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.371e-23
Identity = 59/154 (38.31%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRRH 594
            K++ LG+  VGKTSL+ +++  +F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   ++VYD+ +  SF N   W E+   +      D+   V++GNK D+   + R V++++     A +  I + ET  K  H
Sbjct:   13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG----DDVIIVLVGNKTDL--ADKRQVTQEEGEK-KAKELKIMHMETSAKAGH 159          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 8.371e-23
Identity = 50/122 (40.98%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 492
            L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +Q + ++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N+  W +E      P    N   +++GNK D+
Sbjct:   14 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDP----NIVVMLVGNKSDL 131          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.371e-23
Identity = 54/150 (36.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ +D++   QIWDTAGQER++++  A+YRGA   ++VYD+    +F+N+  W +E           N   +++GNK D+   + R VS + A+A+ A + N  + ET
Sbjct:   14 LFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKEL----RDHTDQNIVIMLVGNKADL--RHLRAVSTEDAKAF-AERENTFFMET 156          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA1C_ARATH3.757e-2340.98Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
ARA1_ARATH4.907e-2336.73Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RB11A_TOBAC5.838e-2336.00Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
YPT5_SCHPO5.844e-2338.16GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
SEC4_YEAST6.409e-2337.66Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
YPT2_SCHPO7.615e-2337.25GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB1A_DICDI7.615e-2336.36Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RYH1_SCHPO8.371e-2338.31GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RIC2_ORYSJ8.371e-2340.98Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11B_TOBAC8.371e-2336.00Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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