DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.426e-22
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS 549
            LKV +LGD+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQE F++L   +YRG+   ++VYD+   ++F  L NW +E         P N    + GNK D+   + R V E+ A+ +  S
Sbjct:    6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKEL----RQHGPPNIVVAIAGNKCDLI--DVREVMERDAKDYADS 139          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.426e-22
Identity = 48/122 (39.34%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 492
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ + ++   QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N++ W +E      P    N   +++GNK D+
Sbjct:   13 LFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDP----NIVVMLVGNKSDL 130          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.149e-22
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            K I+LGDSGVGKTS + +Y   +F    + AT+G     K V  +     LQIWDTAGQERF+S+  A+YR A   +L+YDV +  ++DN+  W  E    A     ++   V++GNK D  G   +V  E   R     + N+P+ ET  K
Sbjct:  192 KTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQ----EDVVIVLIGNKADCSGSERQVKREDGER--LGREHNVPFMETSAK 337          

HSP 2 Score: 25.0238 bits (53), Expect = 6.149e-22
Identity = 11/28 (39.29%), Postives = 16/28 (57.14%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEE 652
            +  SAK G+NVE +F  +A+     G E
Sbjct:  332 METSAKTGLNVELSFTAVARQLKSRGYE 359          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.256e-22
Identity = 58/153 (37.91%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT ++ ++ +  F+  + +TI  DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W       A+    ++   ++L NK D+D  + RVV + K     A +  I +FET  K
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHAN----EDVERMLLRNKCDMD--HKRVVPKGKGEQ-IAREHRIRFFETSAK 154          

HSP 2 Score: 22.3274 bits (46), Expect = 6.256e-22
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNALK 640
            SAK  IN+E+AF  + ++ L+
Sbjct:  152 SAKANINIEKAFLTLPEDILR 172          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.086e-22
Identity = 47/122 (38.52%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 492
            L K++++GDSGVGK++L++++   +F+ + K+TIG +F TK +  ++++   QIWDTAGQER++++  A+YRGA   +LVYDV    +++N+  W +E      P    N   +++GNK D+
Sbjct:   13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDP----NIVVMLIGNKSDL 130          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.086e-22
Identity = 59/156 (37.82%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  112 SRRRTLL---KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYF 570
            SRRR      KV++LG+  VGKTSL+ +Y   KF+++++ T+ A F+ K +    +   L IWDTAGQER+ +LG  +YR +   ++VYD+    SF    NW +E          D     ++GNKID+D    R VSEK A  +  S G   Y+
Sbjct:    8 SRRRQATVKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLG----DKVTLCIVGNKIDLD--RQRTVSEKDALEYAESVGAKHYY 157          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.119e-22
Identity = 57/153 (37.25%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K II+GD+GVGK+ L+ Q+ +K+F   +  TIG +F  + V  + +   LQIWDTAGQE F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A      N   +++GNK D++  + R V  ++  A+    G I + ET  K
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSSSNMVIMLIGNKSDLE--SRRDVKREEGEAFAREHGLI-FMETSAK 151          

HSP 2 Score: 21.557 bits (44), Expect = 8.119e-22
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAK 628
            +  SAK   NVEEAF   AK
Sbjct:  146 METSAKTACNVEEAFINTAK 165          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.255e-22
Identity = 58/156 (37.18%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV--DGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            T +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQERF SL   +YR A   ++VYDV   +SF    +W +E   QAS     +    ++GNKID+  +GG  +V  E+  +   A +  + +FET  K
Sbjct:    6 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKIDMLQEGGERKVAREEGEK--LAEEKGLLFFETSAK 155          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 9.255e-22
Identity = 46/121 (38.02%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 492
            +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +       + P  ++ NKID+
Sbjct:   10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDL 125          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.255e-22
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   97 PRTMPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP-SDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            P+   +R+   +KVI +G++ VGK+ ++ +Y  K+F  +Y ATIG D+   +VQ  DR   + I+D AG   F  +   FY+     +LVYDV   +SFD L+ W  E   +  P  + DN  FVV  NKID      R V E + R W  S+G + YFET
Sbjct:    6 PKRKEARKSLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCT--KHRSVDESEGRLWAESRGFL-YFET 163          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB22A_CANFA5.426e-2239.29Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RAA1B_ARATH5.426e-2239.34Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAB26_DROME6.149e-2238.82Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB10_RAT6.256e-2237.91Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
YPT3_NICPL7.086e-2238.52Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RAB21_GEOCY7.086e-2237.82Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RAB2B_HUMAN8.119e-2237.25Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
VPS21_YEAST9.255e-2237.18Vacuolar protein sorting-associated protein 21 OS=... [more]
RAB23_MOUSE9.255e-2238.02Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
DJC27_CHICK9.255e-2237.89DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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