DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.083e-54
Identity = 104/161 (64.60%), Postives = 131/161 (81.37%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FPFV+LGNKID +  + ++VSEK A+    S G+IP F T  K
Sbjct:    1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAK 160          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPT71_SCHPO (GTP-binding protein ypt71 OS=Schizosaccharomyces pombe GN=ypt71 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.497e-51
Identity = 101/162 (62.35%), Postives = 128/162 (79.01%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETLCK 585
            M +++R  LKV+ILGDSGVGKT LMNQ+VN+KFS +YKATIGADFLTK+V  +D+L TLQ+WDTAGQERFQSLG+AFYRGADCCV+VY+VN+ KSFD++ NWR+EFL Q S  D   FPF+++GN+ID D  + R VS  +A  +C SK   N+ +FE   K
Sbjct:    1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS-QDECAFPFIIVGNQIDKD-ASKRAVSLHRALDYCKSKHGSNMIHFEASAK 160          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.030e-47
Identity = 88/158 (55.70%), Postives = 115/158 (72.78%), Query Frame = 1
Query:  112 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            S +  LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DPD+FPFVVLGNK+D +    R V+ ++A+AWC   GN PY ET  K
Sbjct:    2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVDKE---DRQVTTEEAQAWCMENGNYPYLETSAK 156          

HSP 2 Score: 22.3274 bits (46), Expect = 6.030e-47
Identity = 12/36 (33.33%), Postives = 18/36 (50.00%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQIHLAGH 676
            L  SAK+  NV  AF+   +  L   E+ +  + GH
Sbjct:  151 LETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGH 186          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.542e-46
Identity = 86/158 (54.43%), Postives = 115/158 (72.78%), Query Frame = 1
Query:  112 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            S +  LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP++FPFVVLGNK+D +    R V+ ++A+AWC   G+ PY ET  K
Sbjct:    2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE---DRQVTTEEAQAWCMENGDYPYLETSAK 156          

HSP 2 Score: 22.3274 bits (46), Expect = 6.542e-46
Identity = 12/36 (33.33%), Postives = 18/36 (50.00%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQIHLAGH 676
            L  SAK+  NV  AF+   +  L   E+ +  + GH
Sbjct:  151 LETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGH 186          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.887e-45
Identity = 85/158 (53.80%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  112 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            S +  LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP++FPFVVLGNK+D +    R V+ ++A+ WC   G+ PY ET  K
Sbjct:    2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAK 156          

HSP 2 Score: 22.3274 bits (46), Expect = 1.887e-45
Identity = 12/36 (33.33%), Postives = 18/36 (50.00%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQIHLAGH 676
            L  SAK+  NV  AF+   +  L   E+ +  + GH
Sbjct:  151 LETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGH 186          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.047e-45
Identity = 83/156 (53.21%), Postives = 114/156 (73.08%), Query Frame = 1
Query:  118 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNKID+   + R VS ++A+AWC   G+ PYFET  K
Sbjct:    4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAK 156          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 2.047e-45
Identity = 83/156 (53.21%), Postives = 114/156 (73.08%), Query Frame = 1
Query:  118 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            + +L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNKID+   + R VS ++A+AWC   G+ PYFET  K
Sbjct:    4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAK 156          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.016e-44
Identity = 81/156 (51.92%), Postives = 113/156 (72.44%), Query Frame = 1
Query:  118 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            + +L K+I+LGD GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNK D+     R VS ++A+AWC   G+ PYFET  K
Sbjct:    4 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAK 156          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.016e-44
Identity = 81/156 (51.92%), Postives = 113/156 (72.44%), Query Frame = 1
Query:  118 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            + +L K+I+LGD GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNK D+     R VS ++A+AWC   G+ PYFET  K
Sbjct:    4 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAK 156          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.193e-35
Identity = 75/160 (46.88%), Postives = 105/160 (65.62%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M  R++  LK+II+G  GVGKTSL+++YV+K F   Y+ T+GA  L+K +  ED    LQIWDT GQERF+S+   FY+G+D CVL +DV  ++SF+ L  WR + L +  P +   +P VVLGNKID++    R V ++ A+ WC  K +IPYFE   K
Sbjct:    1 MNPRKKVDLKLIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPME-QPYPMVVLGNKIDLE---DRQVPQEVAQGWCKEK-DIPYFEVSAK 155          

HSP 2 Score: 24.2534 bits (51), Expect = 3.193e-35
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNAL 637
            SAK  INV +AF+ +A  AL
Sbjct:  153 SAKNDINVVQAFEMLASRAL 172          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT7_YEAST1.083e-5464.60GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]
YPT71_SCHPO2.497e-5162.35GTP-binding protein ypt71 OS=Schizosaccharomyces p... [more]
RAB9B_MOUSE6.030e-4755.70Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_PONAB6.542e-4654.43Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_HUMAN1.887e-4553.80Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB9A_HUMAN2.047e-4553.21Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB9A_CANFA2.047e-4553.21Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB9A_RAT1.016e-4451.92Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB9A_MOUSE1.016e-4451.92Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB7B_BOVIN3.193e-3546.88Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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