DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.195e-35
Identity = 74/160 (46.25%), Postives = 109/160 (68.12%), Query Frame = 1
Query:  112 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETLCK 585
            ++ R ++KV+I+G+  VGKTS++ +YV+K+F    K TIG DF    V   + + TLQ+WDT+GQERF+SL +++YRGAD C+LV+DV + K+  +L  WR++F+ +    DP  FPF++LGNKID     +RVV+EK A  WC     GN+ YF+T  K
Sbjct:    2 TKGRKIIKVVIIGEKSVGKTSILRRYVDKRFVT-LKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKID---DPNRVVTEKAAIQWCKDNIGGNLTYFDTSAK 153          

HSP 2 Score: 22.7126 bits (47), Expect = 3.195e-35
Identity = 9/28 (32.14%), Postives = 16/28 (57.14%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNALKSGEEEQI 661
            SAK+ IN+E+ F+ I+       +  +I
Sbjct:  151 SAKDNINIEQVFKHISNQCENQPQSNEI 178          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.623e-34
Identity = 78/196 (39.80%), Postives = 119/196 (60.71%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRRH*CGRSFPVHS*KCFEEWGGGTDTPCRTPLMLEP 693
            M  R++  LK+II+G  GVGKTSL++QYV+K F  +Y+ T+GA  L+K +  +D    LQIWDT GQERF+S+   FY+G+D C+L +DV   +SF+ L+ WR++ L +  P +  ++P VVLGNKID++    R VS++    WC  K ++PYFE   K      ++F V + +    + G  +      + L P
Sbjct:    1 MNPRKKVDLKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPME-QSYPMVVLGNKIDLE---DRKVSQEVVHGWCKEK-DMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKLSP 191          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.005e-33
Identity = 73/160 (45.62%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M  R++  LK+II+G  GVGKTSL++QYV+K F  +Y+ T+GA  L+K +   D    LQIWDT GQERF+S+   FY+G+D C+L +DV  ++SF+ L+ WR + L +  P +  ++P V+LGNKID+     R V ++ A+ WC  K +IPYFE   K
Sbjct:    1 MNPRKKVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME-QSYPMVLLGNKIDL---ADRKVPQEVAQGWCREK-DIPYFEVSAK 155          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.612e-27
Identity = 62/153 (40.52%), Postives = 97/153 (63.40%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L+K++++GDSGVGK+ L+ ++ +  F++ +  TIG DF  K+V  + +L  LQIWDTAGQERF+++  A+YRGA   +LVYD+    SF+N+ NW       AS    DN   +++GNK+D+   + RVVS  + +A  A +    ++ET  K
Sbjct:   13 LIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHAS----DNVNKILVGNKLDL-AEDKRVVSIARGQA-LADEFGFRFYETSAK 159          

HSP 2 Score: 27.7202 bits (60), Expect = 2.612e-27
Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNALKSGEEE 655
            SAK+ ++VEEAF  +AK+ L   E E
Sbjct:  157 SAKDNVHVEEAFIAVAKDVLARMEGE 182          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.513e-27
Identity = 62/153 (40.52%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+N Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    +V+ E+  +   A +  I +FET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDME-AKRKVLKEQADK--LAREHGIRFFETSAK 153          

HSP 2 Score: 25.7942 bits (55), Expect = 7.513e-27
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKN-ALKSG 646
            SAK  +NV+EAF  +A++  LKSG
Sbjct:  151 SAKSSMNVDEAFNSLARDILLKSG 174          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.781e-27
Identity = 63/153 (41.18%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+N Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V +++A       G I +FET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRKVQKEQADKLAREHG-IRFFETSAK 153          

HSP 2 Score: 25.7942 bits (55), Expect = 9.781e-27
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKN-ALKSG 646
            SAK  +NV+EAF  +A++  LKSG
Sbjct:  151 SAKSSMNVDEAFSSLARDILLKSG 174          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.781e-27
Identity = 63/153 (41.18%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+N Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V +++A       G I +FET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRKVQKEQADKLAREHG-IRFFETSAK 153          

HSP 2 Score: 25.7942 bits (55), Expect = 9.781e-27
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKN-ALKSG 646
            SAK  +NV+EAF  +A++  LKSG
Sbjct:  151 SAKSSMNVDEAFSSLARDILLKSG 174          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.154e-26
Identity = 60/150 (40.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K++++GDSGVGK+++++++    FS   K+TIG +F TK +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   +SFDN++ W  E    A  S       +++GNK D+   + R VSE + +A  A K  + + ET
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSS----IVIMMVGNKSDLI--HLRAVSEDEGKA-LAEKEGLFFLET 154          

HSP 2 Score: 27.7202 bits (60), Expect = 2.154e-26
Identity = 14/24 (58.33%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  551 KEIFLTLRPSAKEGINVEEAFQCI 622
            KE    L  SA E +NVEEAFQ I
Sbjct:  146 KEGLFFLETSAMEAVNVEEAFQTI 169          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.808e-26
Identity = 62/153 (40.52%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F++ Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V  ++A    A +  I +FET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRKVQREQAER-LAREHRIRFFETSAK 153          

HSP 2 Score: 25.409 bits (54), Expect = 2.808e-26
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNAL 637
            SAK  +NV+EAF  +A++ L
Sbjct:  151 SAKSSVNVDEAFSSLARDIL 170          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.761e-26
Identity = 62/153 (40.52%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F++ Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V  ++A    A +  I +FET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRQVQREQAEK-LAREHRIRFFETSAK 153          

HSP 2 Score: 25.409 bits (54), Expect = 4.761e-26
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNAL 637
            SAK  +NV+EAF  +A++ L
Sbjct:  151 SAKSSVNVDEAFSSLARDIL 170          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7B_DICDI3.195e-3546.25Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAB7B_MOUSE3.623e-3439.80Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB7B_HUMAN4.005e-3345.63Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
YPTV2_VOLCA2.612e-2740.52GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB13_MESAU7.513e-2740.52Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_HUMAN9.781e-2741.18Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN9.781e-2741.18Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RGP2_ORYSJ2.154e-2640.00Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RAB13_RAT2.808e-2640.52Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MOUSE4.761e-2640.52Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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