DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1545 contig Ccv1_Contig1545:1..1301. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.367e-25
Identity = 61/153 (39.87%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K I++GDS VGK++L+ Q+V+K+F+     TIG +F ++ +   D+   LQIWDTAGQE+F+S+  A+YRGA C ++VYD+    SF++LN+W    L         +   V++GNK D++   +R VS  +A+ + A K  + +FET  K
Sbjct:   24 LFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSW----LTDCRKFSSCDVTTVLIGNKADLEA--NRQVSTSEAKEF-AEKNGLMFFETSAK 169          

HSP 2 Score: 23.0978 bits (48), Expect = 1.367e-25
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNALKSGE 649
            SAK  +NV+EAF+   +  LK  E
Sbjct:  167 SAKTALNVDEAFEKSTEQILKKLE 190          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.775e-25
Identity = 65/163 (39.88%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  109 PSRRRT----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            P+R R     L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW       AS    DN   +++GNK D+D  + R V   K +A  A +  I +FET  K
Sbjct:    5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMD-ESKRAVPTAKGQA-LADEYGIKFFETSAK 161          

HSP 2 Score: 22.7126 bits (47), Expect = 1.775e-25
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKN 631
            SAK  +NVEE F  IA++
Sbjct:  159 SAKTNLNVEEVFFSIARD 176          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB27A_PIG (Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.802e-25
Identity = 68/160 (42.50%), Postives = 99/160 (61.88%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + RVV E++AR   A K  IPYFET
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRVVKEEEARG-LAEKYGIPYFET 162          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.315e-25
Identity = 60/153 (39.22%), Postives = 100/153 (65.36%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            LLK++++GDSGVGK+ ++ ++ + +F++ Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD+ SM SF+++  W  +    ASPS       +++GNK D++  + R V  K A+ + A + NIP  ET  K
Sbjct:   33 LLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPS----VLKLIVGNKCDLN--SKRAVDFKIAKKF-ADELNIPIMETSAK 178          

HSP 2 Score: 21.1718 bits (43), Expect = 2.315e-25
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKS 643
            +  SAKE   ++EAF  +A +  KS
Sbjct:  173 METSAKESTAIDEAFIKLASDIKKS 197          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.354e-25
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  121 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS------KGNIPYFETLCK 585
            +T+LK+I LGDS VGKTSL   YVN ++      +IG D+  KE++ E++   L +WDT GQERFQ+    ++RGA+C  L +D+++ +SF NL  W +E +         N PFV++G K D+     + +S+ +   WC +         + YFET  K
Sbjct:    5 KTMLKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCY----GNIPFVLVGTKSDIP-RTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAK 160          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.011e-25
Identity = 57/153 (37.25%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDS VGK+  + ++ +  + + Y +TIG DF  + V+ E +   LQIWDTAGQERF+++  ++YRGA   ++VYD+  M+SF+N+  W +E    A+    D+   +++GNK D+    +R V    A+A+    G IP+ ET  K
Sbjct:    8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYAN----DSVRKLLVGNKCDL--AENRAVDTSVAQAYAQEVG-IPFLETSAK 153          

HSP 2 Score: 27.335 bits (59), Expect = 3.011e-25
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQIHL 667
            L  SAKE INVEEAF  ++    KS    Q  L
Sbjct:  148 LETSAKESINVEEAFLAMSAAIKKSKAGSQAAL 180          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.074e-25
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + RVV E+ AR   A K  IPYFET
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRVVKEEDARG-LAEKYGIPYFET 162          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.918e-25
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAK 153          

HSP 2 Score: 24.2534 bits (51), Expect = 3.918e-25
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNAL 637
            L  SAK   NVEEAF  +A++ +
Sbjct:  148 LETSAKSSTNVEEAFFTLARDIM 170          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.918e-25
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAK 153          

HSP 2 Score: 24.2534 bits (51), Expect = 3.918e-25
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNAL 637
            L  SAK   NVEEAF  +A++ +
Sbjct:  148 LETSAKSSTNVEEAFFTLARDIM 170          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.918e-25
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAK 153          

HSP 2 Score: 24.2534 bits (51), Expect = 3.918e-25
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNAL 637
            L  SAK   NVEEAF  +A++ +
Sbjct:  148 LETSAKSSTNVEEAFFTLARDIM 170          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_DICDI1.367e-2539.87Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RB1BV_BETVU1.775e-2539.88Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RB27A_PIG1.802e-2542.50Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27... [more]
RAB1C_DICDI2.315e-2539.22Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RABL_DICDI2.354e-2537.27Ras-related protein RabL OS=Dictyostelium discoide... [more]
YPTM1_MAIZE3.011e-2537.25GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RB27A_CANFA3.074e-2542.50Ras-related protein Rab-27A OS=Canis familiaris GN... [more]
RAB8B_RAT3.918e-2540.52Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB3.918e-2540.52Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE3.918e-2540.52Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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