DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAS_BOTFU (Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.370e-15
Identity = 47/153 (30.72%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            K++++G  GVGK+ L  Q +   F ++Y  TI  D   K+   ++ +  L + DTAGQE + ++   + R  +  +LVY + S +SF+ +  ++++ L      D D FP +V+GNK D++G   R VS+++ +   A      + ET  K R
Sbjct:   10 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTI-EDSYRKQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQIL---RVKDKDYFPIIVVGNKCDLEG--ERQVSKQEGQQ-LADDFGCKFIETSAKSR 155          

HSP 2 Score: 22.7126 bits (47), Expect = 7.370e-15
Identity = 12/35 (34.29%), Postives = 18/35 (51.43%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQIHLAG 673
            +  SAK  INV+ AF  I +   +  +E   + AG
Sbjct:  148 IETSAKSRINVDNAFYDIVREIRRYNKEMAGYTAG 182          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.405e-15
Identity = 49/153 (32.03%), Postives = 81/153 (52.94%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            K++++G  GVGK++L  Q++   F   Y  TI  D   K+   +D++  L I DTAGQE F ++   + R  +  +LV+ V    SFD +  +  + L      D + FP +++GNK D++  N R VS  +A+     K  + Y E+  K+R
Sbjct:   10 KLVVVGGGGVGKSALTIQFIQSHFVQDYDPTI-EDSYRKQCVIDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQIL---RVKDIEEFPMILVGNKSDLE--NERTVSTAEAQE-LGRKLKVSYLESSAKQR 155          

HSP 2 Score: 21.557 bits (44), Expect = 7.405e-15
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIA---KNALKSGEE 652
            L  SAK+ INV+ AF  +    +NA K+  E
Sbjct:  148 LESSAKQRINVDAAFHDLVRAIRNANKASVE 178          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAS1_HYDMA (Ras-like protein RAS1 OS=Hydra magnipapillata GN=RAS1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 53/160 (33.12%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  112 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            S   T  K++++G  GVGK++L  Q +   F   Y  TI   ++ K+V  +  +  L I DTAGQE + ++   + R  +  + ++ V S+KSF  ++N+R + L      D D  P V++GNK+D+     R VS K       S G IPY ET  K +
Sbjct:    4 SSEPTKFKMVVVGAGGVGKSALTIQLIQNHFVEDYDPTIEDSYI-KQVVVDGAICILDILDTAGQEEYSAMREHYMRTGEGFLCIFAVTSLKSFQEIDNFRTQAL---RVKDADKVPMVLVGNKVDLP---KRDVSTKDGNDKALSFG-IPYVETSAKTK 155          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D++  + R VS  + RA  A +   P+ ET  K +
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDLE--SEREVSSNEGRA-LAEEWGCPFMETSAKSK 150          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D++  + R VS  + RA  A +   P+ ET  K +
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDLE--SEREVSSNEGRA-LAEEWGCPFMETSAKSK 150          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +        +  P +++GNK+D++  + R VS  + RA  A +   P+ ET  K +
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDLE--SEREVSSSEGRA-LAEEWGCPFMETSAKSK 150          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 42/157 (26.75%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETLCKRRH 594
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+F  L   +Y    C ++++DV +  ++ N+ NW  +          +N P V+ GNK+D        V ++K +A   +   K N+ Y++   K  +
Sbjct:   11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVC-----ENIPIVLCGNKVD--------VKDRKVKAKTITFHRKKNLQYYDISAKSNY 154          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRRH 594
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV S  ++ N+  W  +          +N P V+ GNK+DV    +R V  K+       K N+ Y+E   K  +
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEVSAKSNY 158          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRRH 594
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV S  ++ N+  W  +          +N P V+ GNK+DV    +R V  K+       K N+ Y+E   K  +
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEVSAKSNY 158          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB20_HUMAN (Ras-related protein Rab-20 OS=Homo sapiens GN=RAB20 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.390e-15
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKK 528
            K+++LGD  VGKTSL+ +Y+ ++F +   +T+G  F  K+     R + + IWDTAG+E+F  LG  + RGA   +L YDVN  +S   L    + FL     +  D   F ++GNK+D+    +    EK+
Sbjct:    7 KIVLLGDMNVGKTSLLQRYMERRFPDTV-STVGGAFYLKQW----RSYNISIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVEL---EDRFLGLTDTASKDCL-FAIVGNKVDLTEEGALAGQEKE 129          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_BOTFU7.370e-1530.72Ras-like protein OS=Botryotinia fuckeliana GN=ras1... [more]
RAS2_HYDMA7.405e-1532.03Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RAS1_HYDMA8.390e-1533.13Ras-like protein RAS1 OS=Hydra magnipapillata GN=R... [more]
RAP2A_PONAB8.390e-1532.03Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE8.390e-1532.03Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN8.390e-1532.03Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
RAN_CAEEL8.390e-1526.75GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RAN1_ORYSJ8.390e-1529.22GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI8.390e-1529.22GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAB20_HUMAN8.390e-1535.61Ras-related protein Rab-20 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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