DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 3.918e-25
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAK 153          

HSP 2 Score: 24.2534 bits (51), Expect = 3.918e-25
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNAL 637
            L  SAK   NVEEAF  +A++ +
Sbjct:  148 LETSAKSSANVEEAFFTLARDIM 170          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.920e-25
Identity = 60/153 (39.22%), Postives = 98/153 (64.05%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + V+ + ++  LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    AS    +N   +++GNK D+ G   +VV  + A+A+ A +  IP+ ET  K
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYAS----ENVNKLLVGNKSDLTG--KKVVDYQAAKAF-ADEIGIPFLETSAK 153          

HSP 2 Score: 22.7126 bits (47), Expect = 3.920e-25
Identity = 13/28 (46.43%), Postives = 16/28 (57.14%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIA---KNALKS 643
            L  SAK   NVE+AF  +A   KN + S
Sbjct:  148 LETSAKNATNVEQAFMTMAAEIKNRMAS 175          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RABO_DICDI (Ras-related protein RabO OS=Dictyostelium discoideum GN=rabO PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.091e-25
Identity = 58/160 (36.25%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS-------KGNIPYFETLCK 585
            L++V++LGD  VGKT+    +  K+F       IG DF  K +  +++   LQ+WDT GQERF+++  +++R   CC+L + V+  KSF+N++ W   + +     D  N+P V++GNKID+      V+++K A  WC +       K +IPYFET  K
Sbjct:    8 LIRVVLLGDYCVGKTTTGFVFDGKQFDFSRNCNIGVDFFVKHIVVDNQCVRLQVWDTGGQERFKTITRSYFRNTSCCLLFFSVDDQKSFENIDMW---YSLAFEKYDLLNYPVVLVGNKIDLP-QEKHVITKKMAEEWCKNQQTKLNLKFSIPYFETSAK 163          

HSP 2 Score: 21.9422 bits (45), Expect = 5.091e-25
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKNALKS 643
            SAK  IN+ E F   A+  LK+
Sbjct:  161 SAKNNININEIFYSAAELGLKN 182          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.093e-25
Identity = 65/163 (39.88%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  109 PSRRRT----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            P+R R     L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW       AS    DN   +++GNK D+D  + R V   K +A  A +  I +FET  K
Sbjct:    5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMD-ESKRAVPTAKGQA-LADEYGIKFFETSAK 161          

HSP 2 Score: 21.1718 bits (43), Expect = 5.093e-25
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  578 SAKEGINVEEAFQCIAKN 631
            SAK  +NVEE F  I ++
Sbjct:  159 SAKTNLNVEEVFFSIGRD 176          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.096e-25
Identity = 57/150 (38.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK D+   + R VSE+  +A  A K  + + ET
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLK--HLRAVSEEDGQA-LAEKEGLSFLET 154          

HSP 2 Score: 24.6386 bits (52), Expect = 5.096e-25
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  551 KEIFLTLRPSAKEGINVEEAFQCI 622
            KE    L  SA E +N+E+AFQ I
Sbjct:  146 KEGLSFLETSALEAVNIEKAFQTI 169          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.098e-25
Identity = 62/153 (40.52%), Postives = 93/153 (60.78%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + V+ + +   LQIWDTAGQERF+++  A+YRGA   + VYD+ + KSFDN+ NW       AS SD +    ++LGNK D++    R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--EKRQVSKERGEKLAIDYG-IKFLETSAK 153          

HSP 2 Score: 26.1794 bits (56), Expect = 5.098e-25
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNAL 637
            L  SAK  INVEEAF  +A++ +
Sbjct:  148 LETSAKSSINVEEAFITLARDIM 170          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.243e-25
Identity = 60/156 (38.46%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD----NFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            LK+I++GD  VGKTS++++ +  KF+ +YK+TIGADFL+K     D +  +Q+WDTAGQE++  L  AF+R +D  +LV+D+++  SF NLN W ++F  ++   +PD      P ++L NK D     +R V + +   WC       Y+E   K
Sbjct:   10 LKLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQF--KSKSINPDGTEKQLPILLLANKSD---SLTRAVDQSEINQWCTDHKVNLYYEVSAK 160          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 5.243e-25
Identity = 68/160 (42.50%), Postives = 99/160 (61.88%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + RVV E++A A  A K  IPYFET
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRVVKEEEAIA-LAEKYGIPYFET 162          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB27B_MOUSE (Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 6.848e-25
Identity = 66/160 (41.25%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD    V++GNK D+   + R V+E++AR   A K  IPYFET
Sbjct:    9 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFET 162          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.848e-25
Identity = 67/160 (41.88%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + R V E++AR   A K  IPYFET
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFET 162          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_HUMAN3.918e-2540.52Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
YPTV1_VOLCA3.920e-2539.22GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RABO_DICDI5.091e-2536.25Ras-related protein RabO OS=Dictyostelium discoide... [more]
ARA3_ARATH5.093e-2539.88Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB2BV_BETVU5.096e-2538.00Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB8_DISOM5.098e-2540.52Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RB32D_DICDI5.243e-2538.46Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RB27A_HUMAN5.243e-2542.50Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]
RB27B_MOUSE6.848e-2541.25Ras-related protein Rab-27B OS=Mus musculus GN=Rab... [more]
RB27A_RAT6.848e-2541.88Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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