DY260467

Overview
NameDY260467
Unique NameDY260467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.848e-25
Identity = 67/160 (41.88%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + R V E++AR   A K  IPYFET
Sbjct:    9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFET 162          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.628e-25
Identity = 58/150 (38.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F  + K+TIG +F T+ +Q E R    QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N++ W +E    A      N   +++GNK D+   + R V+ + A+++ A K  + + ET
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMLIGNKTDLK--HLRAVATEDAQSY-AEKEGLSFIET 154          

HSP 2 Score: 23.8682 bits (50), Expect = 8.628e-25
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  551 KEIFLTLRPSAKEGINVEEAFQCI 622
            KE    +  SA E +NVE+AFQ I
Sbjct:  146 KEGLSFIETSALEALNVEKAFQTI 169          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.639e-25
Identity = 61/153 (39.87%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + E   K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLEASAK 153          

HSP 2 Score: 25.0238 bits (53), Expect = 8.639e-25
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNAL 637
            L  SAK  +NVEEAF  +A++ +
Sbjct:  148 LEASAKSSMNVEEAFFTLARDIM 170          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 8.943e-25
Identity = 66/160 (41.25%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD    V++GNK D+   + R V+E++AR   A K +IPYFET
Sbjct:    9 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLIGNKADLP--DQREVNERQARD-LAEKYSIPYFET 162          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.943e-25
Identity = 60/150 (40.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K++I+GDS VGK++L+N++   +F+ + KATIG DF TK ++ +++  T Q WDTAGQERF+++   +YRGA   ++VYD+ S  SF N+  W  E    A      +   +++GNK D++   SR V  K+A+A+ A    I + ET
Sbjct:   10 LFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAE----QDILIMMVGNKSDLE--MSREVPTKEAQAF-AESNKISFLET 152          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.124e-24
Identity = 61/153 (39.87%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS +D +    ++LGNK DV+  + R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAK 153          

HSP 2 Score: 23.483 bits (49), Expect = 1.124e-24
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKN 631
            +  SAK  INVE AF  +A++
Sbjct:  148 METSAKANINVENAFYTLARD 168          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.124e-24
Identity = 58/153 (37.91%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L+K++++GDSGVGK+ L+ ++    F+  +  TIG DF  + ++ E +   LQIWDTAGQERF+++  A+YRGA   +LVYDV   KSF N+ NW       A+    D+   +++GNK D+     +VV   + ++  A +  I + ET  K
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHAT----DSVNKMLIGNKCDM--AEKKVVDSSRGKS-LADEYGIKFLETSAK 160          

HSP 2 Score: 27.7202 bits (60), Expect = 1.124e-24
Identity = 14/24 (58.33%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALK 640
            L  SAK  INVEEAF  +AK+  K
Sbjct:  155 LETSAKNSINVEEAFISLAKDIKK 178          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.461e-24
Identity = 57/150 (38.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A     +N   +++GNK D+   + R V   +ARA+ A K N+ + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----NNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIET 153          

HSP 2 Score: 21.9422 bits (45), Expect = 1.461e-24
Identity = 11/31 (35.48%), Postives = 17/31 (54.84%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCIAKNALKSGEEEQI 661
            +  SA +  NVEEAF+ I     +   ++QI
Sbjct:  151 IETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.462e-24
Identity = 56/150 (37.33%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K +++GDSGVGK++L+ ++   +F+ + K+TIG +F T+ +  +++    QIWDTAGQER++++  A+YRGA   ++VYD+    SFDN+  W +E    A      N   +++GNK D+   + R VS ++A+A+ A++ N+ + ET
Sbjct:   10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKTDL--LHLRAVSTEEAQAF-AAENNLSFIET 152          

HSP 2 Score: 21.9422 bits (45), Expect = 1.462e-24
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  569 LRPSAKEGINVEEAFQCI 622
            +  SA +  NVEEAFQ +
Sbjct:  150 IETSAMDASNVEEAFQTV 167          
BLAST of DY260467 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.525e-24
Identity = 60/153 (39.22%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L+K++++GDSGVGK+ L+ ++   +F+  +  TIG DF  + +   ++   LQ+WDTAGQERF+++  A+YRGA   +LVYDV   KSF+N+ NW +     A+    +    +++GNK D+D    RVVS ++ +A  A K  IP+ E   K
Sbjct:   11 LIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYAN----EGVELILVGNKCDLD--EKRVVSTEQGQA-LADKFGIPFLEASSK 156          
The following BLAST results are available for this feature:
BLAST of DY260467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB27A_MOUSE6.848e-2541.88Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RAA2A_ARATH8.628e-2538.67Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAB8B_BOVIN8.639e-2539.87Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RB27B_BOVIN8.943e-2541.25Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
RB11C_DICDI8.943e-2540.00Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB8A_BOVIN1.124e-2439.87Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8A_DICDI1.124e-2437.91Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RB11B_DISOM1.461e-2438.00Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
YPT3_SCHPO1.462e-2437.33GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RYL1_YARLI1.525e-2439.22Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260467 ID=DY260467; Name=DY260467; organism=Citrus clementina; type=EST; length=1301bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATTAATGT
GGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGG
AGGAACAGATACACCTTGCCGGACACCATTGATGTTGGAACCCGCCCCCC
GCCCAGGGCCAGTGGAAGCAAGTGCCAAAGATATGGGCCAATTTTCTTCA
AGGACCCTCAACCACTTACAGAAATTGATTGGCCCTTTATAACATTTTTC
ATGGGGAACGCAAAGGGTTGCGGTGCAATCTAATGCTTGGGGCCAACCAA
CCCGGTCCCTCCCACCCACCTCCCCTCATCTGGTCCCTGGACTCGCCCCT
CAACCCCACCCATCCACTCGTACACTGCCTCCCCCCCCCCGCACGCCATC
CTGACTCTCCCCTATCCCGCGCAACCCGCCCGTTGGTCCTCACCCCCCTC
TATGCATCTCCCCCACCAGGACCAGCCATACAAGATCCACAGGCACAACA
CTTCCCTCTCTACACATCACTCTGCCCCTTCATGCCCAACCACTACGACC
TACATCACAACTCCCATCCACGACACAACCACCACATCCCCCCCCCCACC
ACACACCCCGACTCACTACTCCAGACACCTCCCCCCGCTGCACTCCTCCA
CAGACCCAGGCCCTGCATACCACACGCCGCCTGAACACACCACACCCCAA
CACTACATGCCCACACACACCGTACAGCCTCTCGTCGCCCATGCACGGAC
C
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