DY260471

Overview
NameDY260471
Unique NameDY260471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1219
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.520e-14
Identity = 54/178 (30.34%), Postives = 89/178 (50.00%), Query Frame = 3
Query:   78 QRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWA 605
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  ++Q +   + +GL V+G+VC +     RE+L+ T + +  G ++IL++NA    F                +  N ++   +++   P ++  G G+++ +SS+A     P  S Y  SK A+  LTK LA + A
Sbjct:    8 RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAT-AVKLHGGIDILVSNAAVNPFFGS-IMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELA 183          

HSP 2 Score: 23.0978 bits (48), Expect = 3.520e-14
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRT 652
            K L + +    IRVN +AP +I+T
Sbjct:  176 KTLAIELAPRNIRVNCLAPGLIKT 199          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.991e-14
Identity = 53/175 (30.29%), Postives = 86/175 (49.14%), Query Frame = 3
Query:   84 WSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAK 608
            +SL G  ALVTG ++GIG  + + LA +GA V    RN   L+     ++++GL+ S +V D+  +      +  +     G ++ILINNAG                 +M+TN  + + + Q     +   G G I+ I SV   +A P  + Y ++KGA+  LTK +A  W +
Sbjct:    7 FSLSGARALVTGASRGIGLTLAKGLARYGAEVVLNGRNAESLDSAQSGFEAEGLKASTAVFDVTDQDAVIDGVAAIERDM-GPIDILINNAGIQRRAPLEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGR 180          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.718e-14
Identity = 54/174 (31.03%), Postives = 84/174 (48.28%), Query Frame = 3
Query:   90 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWA 605
            L    ALVT  T GIG A+   LA  GA V   SR +  +++ +   + +GL V+G VC +     REKL+        G ++IL++NA    F               V++ N  ++  + +   P ++  G G+++ +SSVAG +  P    Y  SK A+  LTKN A + A
Sbjct:   12 LANKVALVTASTDGIGLAIARRLAEDGAHVVISSRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQG-IDILVSNAAVNPFFGN-LMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELA 183          

HSP 2 Score: 21.1718 bits (43), Expect = 7.718e-14
Identity = 9/24 (37.50%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRT 652
            K     +    IRVN +AP +I+T
Sbjct:  176 KNFAAELAPKNIRVNCLAPGLIKT 199          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: SOU1_SCHPO (Sorbose reductase sou1 OS=Schizosaccharomyces pombe GN=sou1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.513e-14
Identity = 54/178 (30.34%), Postives = 88/178 (49.44%), Query Frame = 3
Query:   84 WSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTC-SRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPK-XXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIA--IPMCSIYASSKGAMNPLTKNLACQWA 605
            +SLKG T L+TGG+ GIG+++ +  AA G+ V     RN+  L    +     G+Q     C ++ R+   +       +  G+L+++I NAG  IP              V+  N   AY+ +Q A    K  G G++IF +S++G IA      + Y ++K A+  L + LA +WA
Sbjct:    5 FSLKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQQWASYHATKAAVKHLARALAVEWA 182          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: BDHA_RALEH (D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hbdH1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 8.513e-14
Identity = 63/215 (29.30%), Postives = 97/215 (45.12%), Query Frame = 3
Query:   90 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAKTKFV*IQLHHGSLEPHLLIP*KKIQIFRTCKSHGTPVLQCPR 734
            L G TALVTG T GIG  + + LAA GA +      + +  +       +G++V     D+   A+ E +M    S F G  +IL+NNAG                 ++  N  SA+H ++LA P +K    G II ++S  G++A    S Y ++K  +   TK  A + A+T      +  G     +L P  + Q+    +  G PV Q  R
Sbjct:    2 LNGKTALVTGSTSGIGLGIAKALAAQGANIIVNGFGDADAAKAEIAQAGQGIRVGYHGADMSKAAEIEDMMRYAQSDFGG-ADILVNNAGIQHVAAIEDFPPERWDAIIAINLTSAFHTTRLALPGMKQKDWGRIINVASTHGLVASAQKSAYVAAKHGIVGFTKVTALETAQTGVTANAICPG----WVLTPLVQKQVEARAQKEGIPVEQAKR 211          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.856e-13
Identity = 51/178 (28.65%), Postives = 89/178 (50.00%), Query Frame = 3
Query:   78 QRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWA 605
            +R  L    A+VT  T GIG A+   LA  GA V   SR +  +++ +   +++GL V+G+VC +     RE+L+ T +    G ++IL++NA    F  K            ++  N ++   +++   P ++  G G+++ ++S+A          Y  SK A+  LTKNLA + A
Sbjct:    8 RRDPLANKVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNVDRAVAALQAEGLSVTGTVCHVGKAEDRERLVAT-ALNLHGGIDILVSNAAVNPFFGK-LMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELA 183          

HSP 2 Score: 23.8682 bits (50), Expect = 2.856e-13
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRT 652
            K L + +    IRVN +AP +I+T
Sbjct:  176 KNLALELAAQNIRVNCLAPGLIKT 199          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.206e-13
Identity = 46/174 (26.44%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   90 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAKT 611
            +K   A+VTG + GIG A+ ++L+  GA +    RNE  LN+  Q+  +    VS    D+ +++  + ++  V   F G ++I++N+AG  +              ++  N +   H+ Q   P L    +G+II ++SV+G       ++Y ++K A++ +T++L  + A+T
Sbjct:    4 VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVS---ADVTVKSNIDDMLKAVIDHF-GHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELART 173          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.206e-13
Identity = 46/174 (26.44%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   90 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAKT 611
            +K   A+VTG + GIG A+ ++L+  GA +    RNE  LN+  Q+  +    VS    D+ +++  + ++  V   F G ++I++N+AG  +              ++  N +   H+ Q   P L    +G+II ++SV+G       ++Y ++K A++ +T++L  + A+T
Sbjct:    4 VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVS---ADVTVKSNIDDMLKAVIDHF-GHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELART 173          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.372e-12
Identity = 55/175 (31.43%), Postives = 76/175 (43.43%), Query Frame = 3
Query:   69 FREQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLA 593
            F      L G  A++TG   GIG  +    A  GA V     N    N  + E +  G Q     CD+    +   L     S+  GK++IL+NNAG   PK                N  S +HLSQL  P ++  G G I+ I+S+A        + YASSK A + L +N+A
Sbjct:    2 FNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNAGGGGPK-PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMA 174          

HSP 2 Score: 25.0238 bits (53), Expect = 1.372e-12
Identity = 11/30 (36.67%), Postives = 17/30 (56.67%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRTPPLDTV 670
            + +   +G+  IRVN +AP  I T  L +V
Sbjct:  171 RNMAFDLGEKNIRVNGIAPGAILTDALKSV 200          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.372e-12
Identity = 55/175 (31.43%), Postives = 76/175 (43.43%), Query Frame = 3
Query:   69 FREQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLA 593
            F      L G  A++TG   GIG  +    A  GA V     N    N  + E +  G Q     CD+    +   L     S+  GK++IL+NNAG   PK                N  S +HLSQL  P ++  G G I+ I+S+A        + YASSK A + L +N+A
Sbjct:    2 FNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNAGGGGPK-PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMA 174          

HSP 2 Score: 25.0238 bits (53), Expect = 1.372e-12
Identity = 11/30 (36.67%), Postives = 17/30 (56.67%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRTPPLDTV 670
            + +   +G+  IRVN +AP  I T  L +V
Sbjct:  171 RNMAFDLGEKNIRVNGIAPGAILTDALKSV 200          
The following BLAST results are available for this feature:
BLAST of DY260471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
DHRS4_HUMAN3.520e-1430.34Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
GNO_GLUOX4.991e-1430.29Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
DHRS4_RAT7.718e-1431.03Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
SOU1_SCHPO8.513e-1430.34Sorbose reductase sou1 OS=Schizosaccharomyces pomb... [more]
BDHA_RALEH8.513e-1429.30D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia ... [more]
DHRS4_RABIT2.856e-1328.65Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
Y2049_STAEQ7.206e-1326.44Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES7.206e-1326.44Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
HDHA_ECOLI1.372e-1231.437-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO571.372e-1231.437-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260471 ID=DY260471; Name=DY260471; organism=Citrus clementina; type=EST; length=1219bp
GTATTTTAGATAAGATAGGAATAGTTGCTTTTCCTCCTATTAATCAATAG
GAAAAAAACATGTCAGATTTTAGAGAGCAAAGATGGTCTCTGAAGGGTAT
GACCGCCCTTGTCACAGGCGGAACCAAAGGCATCGGATATGCAGTAGTAG
AAGAACTAGCAGCATTTGGAGCAATAGTTCATACATGTTCCCGTAACGAA
ACAGAGCTTAATCAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTCAAGT
GAGTGGCTCTGTATGTGACCTGAAAATTAGAGCTCAGCGAGAGAAGCTGA
TGTTGACTGTCTCGTCTCAGTTTGATGGCAAGCTCAACATCCTTATTAAC
AATGCTGGAACCTTCATACCTAAGGAAACCACAGAATTTACCGAGGAGGA
TTTCTCAACTGTAATGACTACCAATTTTGAGTCTGCTTATCATCTGTCTC
AACTTGCACACCCCCTCTTAAAATCAGCAGGAAATGGAAACATCATATTT
ATATCCTCTGTTGCAGGCGTTATTGCTATACCTATGTGTTCCATCTATGC
ATCGAGTAAAGGGGCGATGAATCCACTCACAAAGAACTTGGCATGCCAGT
GGGCAAAAACCAAATTCGTGTGAATACAGTTGCACCATGGGTCATTAGAA
CCCCACCTCTTGATACCGTAAAAAAAGATTCAAATTTTCCGGACATGCAA
ATCCCATGGTACTCCCGTACTCCAATGCCCCCGCCCCGGAGAACCTAACA
AGGGTTCCTCCCTAGGAAGCATTCCCTAAGCTTGCCGCCCCCCTTCAATA
TCCCCGGGGCCAGCGTAATTGGGTCACCGGAGGACCCCCATCCCGGAATT
TTAACCGACCCCTCATAACTCTCATAGCTTGTTCCCATCCGTCCCGGCCC
ACCAAGCACCCACCCCGACCCCCTCCAAACCCAAACTCAACCCTAGCCAC
CACGTCCCGCGCTCCCCGCCGCCTCACTGAACCTCACCACCACCACAACT
CCGATCTCTCAGCCACATAGCCACCACACCAACCCATACACGACCCTACC
ACACTAACCCCTCATACGCACAGCCCTCCACTTGGTTTCGCTGCCCCTCG
ACCTTTACTGCCACCCATCACGACTCTCTCTCTAACGAAAGCATCCACAC
ACACTCCACGTCTACATCCCCTGATACACAAACATGCTCACCCATACGCC
CTCACCCCCTCCACCACCC
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