DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_GRATL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gracilaria tenuistipitata var. liui GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.471e-19
Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHS 499
            + + +LDGWG  +  K N I +ADTPT+D    S P    L+ A G  VGLP E  MGNSEVGH  +GAGRI  Q    +  ++     + +E  N I  K +F    LHLIGL S+GGVHS
Sbjct:    4 IILTILDGWGYSENKKGNAIQIADTPTIDKLWNSYPNT--LLNASGRDVGLP-EGQMGNSEVGHTTIGAGRIINQDLVRISKSIEDRSFFNNEAINSICQKINFYNTKLHLIGLCSNGGVHS 122          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_THERP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.546e-18
Identity = 58/128 (45.31%), Postives = 74/128 (57.81%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHS 499
            + R  +V +VVLDGW        N I  A TP MD  + + P     +R  G  VGLP +D MGNSEVGH  LGAGRI  Q    +DLA+  G  +Q+E F   +  + + G TLHL+GL+ DGGVHS
Sbjct:    1 MDRPPMVCLVVLDGWAIGPDYPGNAIRAAHTPVMDRLQATYP--MTTLRCWGRDVGLP-DDQMGNSEVGHLNLGAGRIVYQLITRIDLAIEDGSFFQNEAFQRALDRARQPGRTLHLMGLIGDGGVHS 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.632e-18
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHS 499
            V +V+LDGWG  +   YN I VA+TP MDS  ++ P+   L+R  G  VGLP E  MGNSEVGH  +GAGRI  Q    +  A+  G I+Q      +  +     G LHLIGL S GGVHS
Sbjct:    9 VVLVILDGWGYRQTTDYNAIAVANTPVMDSLWEAYPK--TLIRTSGKDVGLP-EGQMGNSEVGHLNIGAGRIVPQELVRITDAIEDGSIFQSPVLINLCDEVKGRGGKLHLIGLSSAGGVHS 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PROMM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9313) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.049e-18
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  125 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHS 499
            SR   V + +LDGWG  +  ++N I  A+TP MD+   + P    L+ A G+AVGLP ++ MGNSEVGH  +GAGR+  Q    +   + +G++ Q      +        GTLHL+GL SDGGVHS
Sbjct:   13 SRVAPVVLAILDGWGHREEVEHNSIRSAETPIMDALWHAYPHT--LIEASGAAVGLP-DNQMGNSEVGHLTIGAGRVIRQELVRISETVQAGRLGQTPALIALAERLRKSDGTLHLLGLCSDGGVHS 136          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Lens) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.900e-18
Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHS 499
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    L++A G  VGLP ++ MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPH--ILLKASGLPVGLP-DEQMGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHS 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.900e-18
Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHS 499
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    L++A G  VGLP ++ MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPH--ILLKASGLPVGLP-DEQMGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHS 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Corby) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.900e-18
Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHS 499
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    L++A G  VGLP ++ MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPH--ILLKASGLPVGLP-DEQMGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHS 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Paris) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.900e-18
Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHS 499
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    L++A G  VGLP ++ MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPH--ILLKASGLPVGLP-DEQMGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHS 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PROM3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9303) GN=gpmI PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.032e-17
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHS 499
            V + +LDGWG  +  ++N I  A+TP MD+   + P    L+ A G+AVGLP ++ MGNSEVGH  +GAGR+  Q    +   + +G++ Q      +        GTLHL+GL SDGGVHS
Sbjct:   18 VVLAILDGWGHREELEHNSIRSAETPIMDALWHAYPHT--LIEASGAAVGLP-DNQMGNSEVGHLTIGAGRVIRQELVRISETVQTGRLGQTPALIALAERLRKSDGTLHLLGLCSDGGVHS 136          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PROMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.760e-17
Identity = 55/122 (45.08%), Postives = 72/122 (59.02%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHS 499
            V + +LDGWG  + +  N I+ ADTP MD+  ++ P    L+ A G+ VGLP ++ MGNSEVGH  +GAGRI  Q    +   + S K+ Q     N      ET  TLHL+GL SDGGVHS
Sbjct:   18 VVLTILDGWGHREENINNAINNADTPVMDALWQAYPH--TLIEASGADVGLP-DNQMGNSEVGHLTIGAGRIIQQELVRISNTIRSKKLDQITNLSNLANKLIETDKTLHLVGLCSDGGVHS 136          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_GRATL5.471e-1945.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THERP3.546e-1845.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP74.632e-1846.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMM6.049e-1841.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPL7.900e-1839.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPH7.900e-1839.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPC7.900e-1839.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPA7.900e-1839.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM31.032e-1741.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMA1.760e-1745.082,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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