DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_FRATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.395e-14
Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  +
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPK--TLINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNVIK---NDSNLHLIGLLSPGGVHSHEE 126          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_FRATF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.395e-14
Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  +
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPK--TLINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNVIK---NDSNLHLIGLLSPGGVHSHEE 126          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_DESAP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Desulforudis audaxviator (strain MP104C) GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.395e-14
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHS 499
            +S N  + +V+LDGWG     + N I  ADTP  + ++   P    +++  G  VGLP    MGNSEVGH  LGAGRI  Q    +  A+  G  +++      I+ S   G  LHL+GLLSDGGVHS
Sbjct:    1 MSPNTPLVLVILDGWGCGDRVEGNAIAQADTPNWNRYRSVWPRT--VLKCSGEDVGLPP-GQMGNSEVGHLNLGAGRIVYQDLTRITRAVRDGSFFENAVLRTSIEASRRNGHALHLMGLLSDGGVHS 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_ANTSP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Antithamnion sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.395e-14
Identity = 52/127 (40.94%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-------YIKPSFETGTLHLIGLLSDGGVHS 499
            + +++LDGWG     K N IH A+TP +D    + P+   L+ A G  VGLP    MGNSEVGH  +GAGRI  Q     DL   S  I   E FN       Y     +   +H++GL S+GGVHS
Sbjct:    9 IILMILDGWGHSTNAKGNAIHEANTPIIDKLWDNYPK--TLLSASGEHVGLP-HKQMGNSEVGHTTIGAGRIINQ-----DLVKISKSIKNKEFFNNYQLHNIYKYSCEKNSKVHIVGLCSNGGVHS 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_WOLSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolinella succinogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.821e-14
Identity = 50/118 (42.37%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHS 499
            +++ DG G      +N    A  PT DS   SAP    L+  HG +VGLP E  MGNSEVGH  +GAGRI  Q    + LAL  G +  ++    +  S     +HL GL SDGGVHS
Sbjct:    7 LIITDGIGHKPSSPHNAFTQAKKPTYDSLFASAPHA--LLSTHGLSVGLP-EGQMGNSEVGHMCIGAGRILYQDLVKISLALKDGSL--EKNPTLLGFSSRAKRIHLAGLASDGGVHS 119          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_VIBSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio splendidus (strain LGP32) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.821e-14
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRPD 508
            +S    +A+V+LDG+G  + ++ N I  A TP +D    + P    L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  ++A G+  Q E   N +  + +    +H++GL+S GGVHS  D
Sbjct:    1 MSAKKPMALVILDGYGYREDNQDNAIANAKTPVLDGLIANQPNT--LISASGLDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKSIADGEFGQTEALVNAVDKAVKVDKAVHIMGLMSPGGVHSHED 128          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.821e-14
Identity = 52/154 (33.77%), Postives = 83/154 (53.90%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAKRSQ*AWCLNNPSFSLLLHGREV 595
            +++LDGWG  +  + N I  A TP +D  +K  P  +  +   G AVGLP +  MGNSEVGH  +GAGR+  Q    +++++ +G  +++    +  + +K      +LHL+GL+S GGVHS       + K +Q    L      + L GR+V
Sbjct:   16 LMILDGWGYREEKEGNAILAASTPHLDRLQKERPSCF--LETSGEAVGLP-QGQMGNSEVGHLNIGAGRVVYQDLTKINVSIRNGDFFENPVLLDAISNVK--LNNSSLHLMGLVSYGGVHSHMTHLYALIKLAQ-EKGLKKVYIHVFLDGRDV 163          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_METFK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.821e-14
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            +V+LDG+G  +    N I +A+TP +D F    P    L+ A  + VGLP    MGNSEVGH  +GAGR+  Q  + ++ A+AS + + +    E  N  K   +   +H++GLLSDGGVHS  D
Sbjct:    8 LVILDGFGYREDSHDNAIALANTPNIDRFWTQYPHT--LINASETFVGLP-RGQMGNSEVGHLNIGAGRVVFQDFERINQAIASREFFSNPVLIEAVNKAKAGHK--AVHILGLLSDGGVHSHQD 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_GLUOX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gluconobacter oxydans GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.821e-14
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRPDPTSVVAK 529
            V +V+LDG+G  + +  N + +A+TPT D+   ++P  +  ++  G  VGLP +  MGNSEVGH  +GAGR+  Q    +  +   G + Q+        + +   GT HL+GL+S GGVH+  D    + K
Sbjct:   10 VMLVILDGFGWREDESDNAVRLANTPTFDTLWATSPHAF--LKTSGEDVGLP-DGQMGNSEVGHLNIGAGRVVMQELPRISRSARDGSLAQNPALLEFIAALKASGGTCHLMGLISPGGVHAHQDHVVALTK 138          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_FRATT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.821e-14
Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            +V+LDGWG    D +N I  A+TPT DS  +  P+   L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+       ++       N IK       LHLIGLLS GGVHS  +
Sbjct:    7 LVILDGWGYSDSDYFNAIKNANTPTWDSIWQEFPK--TLINASSLEVGLP-RSQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGDNKAICAAIDNAIK---NDSNLHLIGLLSPGGVHSHEE 126          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_FRATH1.395e-1441.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATF1.395e-1441.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DESAP1.395e-1441.412,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANTSP1.395e-1440.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLSU1.821e-1442.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBSL1.821e-1437.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METMA1.821e-1433.772,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METFK1.821e-1440.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLUOX1.821e-1434.852,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATT1.821e-1441.272,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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