DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_FRAP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.107e-14
Identity = 52/126 (41.27%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLAL-----ASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            +V+LDGWG  + D +N I  A+TPT DS  +  P    L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+      + K   D   N I+   +   LHL+GLLS GGVHS  +
Sbjct:    7 LVILDGWGYSESDYFNAIKNANTPTWDSIWQDFPR--TLISASSLEVGLP-RGQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGNNKAICDAIDNVIQ---KDSNLHLMGLLSPGGVHSHEE 126          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.107e-14
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRPDPTSV---VAKRSQ*AWCLNNPSFSLLLHGREV 595
            ++R   V ++++DGWG   P   N   +ADTP +D +  + P  +  + A G  VGLP E  +GNSEVGH  +GAG I  Q    +  A+A G  + +  F     ++K       LHL+GL   GGVH+  D       +A R Q    +      L L GR+V
Sbjct:    1 MTRPRPVVLIIMDGWGVAPPGPGNAADLADTPHVDEWMATCP--FTTLGASGLDVGLP-EGQIGNSEVGHLNIGAGFIVYQELTRISKAIADGDFFTNPAFLQAIEHVKQ--HNSALHLMGLFGPGGVHAHEDHLHALLELAHRQQ----VRRVYLHLFLDGRDV 156          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.107e-14
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHS 499
            A+++LDG+G       N +  A  P  D +    P +   + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  +++ F + IK + +    LHL GLLSDGGVHS
Sbjct:    7 ALIILDGFGLRNETVGNAVAQAKKPNFDRYWNQYPHQ--TLTASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFERNQTFLDAIKNAKDNDKALHLFGLLSDGGVHS 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_ACHLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acholeplasma laidlawii (strain PG-8A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.107e-14
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  128 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSR 502
            +    A++++DG G       N + +ADT  +D+  K  P    +    G AVGLP E  MGNSEVGH  LGAGRI  Q    +++A+  G  ++++ F             LH++GL+SDGGVH++
Sbjct:    2 KEKFAALIIMDGLGIAPASDSNSVTLADTTYLDNLLKEYPNSTLVTS--GEAVGLP-EGQMGNSEVGHLNLGAGRIVWQSLSRINVAIKDGSFFKNQAFLDAVAHAKKHNSKLHIMGLVSDGGVHAQ 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_ACAM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acaryochloris marina (strain MBIC 11017) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.107e-14
Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRPD 508
            V +V+LDGWG  +    N I  A+TP +DS   + P  +  ++  G AVGLP    MGNSEVGH  LGAGR   Q    +  A+  G +  +   + +  + S  +  LHLIGL S GGVH+  D
Sbjct:    9 VVLVILDGWGYQENSDGNAIATANTPIIDSLWTAYPSTF--IQTSGKAVGLPA-GQMGNSEVGHLNLGAGRTVPQELVRIADAIEDGSLATNPALDKVCKQVSQASTKLHLIGLCSKGGVHAHSD 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_HAHCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Hahella chejuensis (strain KCTC 2396) GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.058e-14
Identity = 52/124 (41.94%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRPD 508
            A+++LDGWG  +    N I  A+TP  D      P    L+   G AVGLP E  MGNSEVGH  LGAGRI  Q    +   +  G   Q+    + I  +   G  +HL+GLLS GGVHS  D
Sbjct:    9 ALLILDGWGYREGKDSNAIANANTPFWDQISSQNPHV--LIHTSGMAVGLP-EGQMGNSEVGHMNLGAGRIVYQNFTRITKDIEDGVFAQNPAISSAIDKAVSNGKAVHLLGLLSPGGVHSHED 129          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_GLOVI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gloeobacter violaceus GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.058e-14
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHS 499
            +V+LDGWG  +    N +  A TP  D+ K S P  + L+   G AVGLP    MGNSEVGH  LGAGR+  Q    +  A+  G +  +     +  +     G LH +GL+SDGGVHS
Sbjct:   15 LVILDGWGYREQTDGNAVAAAKTPIFDALKASYP--FTLIHTSGKAVGLP-RGQMGNSEVGHLNLGAGRMVPQELVRISDAVEEGTLLSNPELLRLCRTVRERGGKLHGVGLVSDGGVHS 131          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_AGRT5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.058e-14
Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVH 496
            V + +LDGWG  +    N   +A+TPTMD    + P     +   G  VGLPT   MGNSEVGH  +GAGRI A     +DLA+  G  +++        + +   G  HL+ ++SDGGVH
Sbjct:    7 VVLTILDGWGLNEDTSSNAPVLANTPTMDRLFATCPNA--TLTTFGPNVGLPT-GQMGNSEVGHTNIGAGRIVAMDLGQIDLAIEDGSFFRNAAMLDFAATVKAAGGVAHLMCVVSDGGVH 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SHEAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.299e-14
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPS--FETGTLHLIGLLSDGGVHSRPD 508
            +A+++LDGWG  +  + N I  A+TP +D+ K + P    L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A+  G+   +        +     G +H++GLLS GGVHS  +
Sbjct:    7 LALLILDGWGYREDQESNAIFHANTPVLDNLKANYPN--GLISGSGHDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAIEDGEFDDNPALCKAVDAAIAANGAVHIMGLLSPGGVHSHEE 128          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PSEU2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gpmI PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 5.299e-14
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRPDPTSVVAK 529
            + +++LDG+G  +  K N I  A  P MD   ++ P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++      +  +   G  +H++GLLSDGGVHS  D    +A+
Sbjct:    8 LVLIILDGFGHSESHKGNAILAAKMPVMDRLYQTMPNG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVSAGKAVHIMGLLSDGGVHSHQDHLVAMAE 136          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_FRAP23.107e-1441.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAD3.107e-1433.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACA23.107e-1442.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACHLI3.107e-1436.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACAM13.107e-1440.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HAHCH4.058e-1441.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLOVI4.058e-1440.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AGRT54.058e-1438.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEAM5.299e-1437.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEU25.299e-1437.122,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
back to top