DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_TRIEI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Trichodesmium erythraeum (strain IMS101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.299e-17
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKY-NCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHS 499
            V +++LDGWG Y+ +KY N I V  TP +DS  ++ P    L++A G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++    I          LHL+GL S GGVHS
Sbjct:    9 VVLIILDGWG-YREEKYGNAIAVGKTPNIDSLWQAYPRT--LIQASGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGLIVQNQAIKKICQDVIERNSKLHLVGLCSSGGVHS 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SACD2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.299e-17
Identity = 52/125 (41.60%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRPD 508
            +A+++LDG+G  + DKYN I+ A  PT        P+    +   G AVGLP E  MGNSEVGH  LGAGR+  Q    ++ A+A G  Y +  +       ++    +H+IGLLSDGGVHS  D
Sbjct:    8 LALIILDGFGYSESDKYNAINAAKAPTWRKIWAENPKT--TIATSGMAVGLP-EGQMGNSEVGHMTLGAGRVVYQNFTRINKAIADGDFYTNPVYTKAVDDAQSQGKAVHVIGLLSDGGVHSHED 129          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.299e-17
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAKRSQ 538
            VA++++DG+G  K  K N I  + TP +D  KK  P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  + ++       + +  +LH++GLLSDGGVHS  D    + K ++
Sbjct:    6 VALIIMDGFGYNKDVKGNAIAESKTPNLDRIKKEYPNT--LINASGLDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKSIKDGDFFTNKVLCEAMDNAKENSLHVMGLLSDGGVHSHIDHLKAIIKMAK 135          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PROMT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL2A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.002e-17
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHS 499
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S +   GTLH++GL SDGGVHS
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLIANPALNQFSQSLKKGGGTLHIMGLCSDGGVHS 136          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PROM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL1A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.002e-17
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHS 499
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S +   GTLH++GL SDGGVHS
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLITNPALNQFSQSLKKGGGTLHIMGLCSDGGVHS 136          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SYNY3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechocystis sp. (strain PCC 6803) GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.921e-17
Identity = 57/126 (45.24%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPD-KYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRPD 508
            V +V+LDGWG Y+PD + N I  A+TP MDS   + P    LV   G  VGLP +  MGNSEVGH  LGAGR+  Q    +  A+  G  + ++    +  +     G LHLIGL SDGGVHS  D
Sbjct:    9 VVLVILDGWG-YRPDTRANAIAQANTPIMDSLIAAYPNT--LVNTSGKDVGLP-KGQMGNSEVGHLNLGAGRVVPQELVRISDAIEDGTFFDNQALIEVCQRVRDRRGKLHLIGLCSDGGVHSHID 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mobile GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.921e-17
Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            V + V+DG G  +  + N   +A TP  D      P    +++A G  VGLP +D MGNSEVGH  +GAG+I   G  L++  +   K  Q+      FN +K + ET TLHL+GLLSDGGVHS  +
Sbjct:    5 VILSVIDGLGLREEKQGNAFKLAKTPNFDKLFNEYPNS--VIQASGDYVGLP-DDQMGNSEVGHLNIGAGQIVYTGLSLINKDIKDNKFKQNAKFIAAFNAVKKNNETNTLHLMGLLSDGGVHSHEE 128          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PSEMY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas mendocina (strain ymp) GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.121e-17
Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRPDPTSVVAK 529
            + +++LDG+G     +YN IH A TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ + +   N  +  +   G  +H++GLLSDGGVHS  D    +A+
Sbjct:    8 LVLIILDGFGHSDKPEYNAIHAASTPVYDRLRATYPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFDNAAINQAVDKAVAAGKAVHILGLLSDGGVHSHQDHIVAMAE 136          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACME (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus megaterium GN=gpmI PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 5.121e-17
Identity = 57/122 (46.72%), Postives = 72/122 (59.02%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEG-FNYIKPSFETGT-LHLIGLLSDGGVHS 499
            VA+++LDG+     DK N +  A  P  D F    P     ++A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  Q+E     +K + E GT LHL GLLSDGGVHS
Sbjct:    6 VALIILDGFALRDEDKGNAVTHAKKPNFDRFWNEYPHA--TLQASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFEQNETLLAAVKHAKEKGTNLHLFGLLSDGGVHS 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_RHOSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.688e-17
Identity = 50/121 (41.32%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVH 496
            V + +LDGWG     + N + +ADTPT D    + P    +   HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K     GT HL+G++SDGGVH
Sbjct:    7 VVLCILDGWGLRAEREANAVALADTPTFDRLMATCPNATLVT--HGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIAKVKANGGTAHLMGVVSDGGVH 124          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_TRIEI2.299e-1744.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SACD22.299e-1741.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOD62.299e-1738.352,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMT3.002e-1740.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM13.002e-1740.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNY33.921e-1745.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMO3.921e-1741.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEMY5.121e-1738.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACME5.121e-1746.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOSK6.688e-1741.322,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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