DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_MOOTA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Moorella thermoacetica (strain ATCC 39073) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.462e-11
Identity = 48/128 (37.50%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  131 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFE-TGTLHLIGLLSDGGVHSRPD 508
            N  + +++LDG+G     + N I     P         P     +RA G AVGLP    MGNSEVGH  +GAGRI  Q    +  A+  G  + +      ++ + E  G LHL+GL+SDGGVHS  D
Sbjct:    6 NRPLMLMILDGFGLGPEGEGNAISQGRLPNYRRLLAGYPHT--RLRASGEAVGLPA-GQMGNSEVGHLNIGAGRIVYQELTRISKAIRDGSFFSNAALVGAVRAAREHGGALHLMGLVSDGGVHSHLD 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACTN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides thetaiotaomicron GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.462e-11
Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHS 499
            +++LDGWG     K + I    TP  D    + P     ++A G  VGLP +  MGNSEVGH  +GAGR+  Q    ++ A A   I Q+      F+Y K + +  ++H +GL S+GGVHS
Sbjct:    7 LMILDGWGLGDQKKDDVIFNTPTPYWDYLMNNYPHSQ--LQASGENVGLP-DGQMGNSEVGHLNIGAGRVVYQDLVKINRACADNSILQNPEIVSAFSYAKENGK--SVHFMGLTSNGGVHS 123          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACFR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.215e-11
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            +++LDGWG     K + I    TP  D   ++ P     ++A G  VGLP +  MGNSEVGH  +GAGR+  Q    ++L+     I ++      F+Y K + +   +H +GL SDGGVHS  D
Sbjct:    7 LMILDGWGLGDHGKDDVIFNTATPYWDYLMETYPHSQ--LQASGENVGLP-DGQMGNSEVGHLNIGAGRVVYQDLVKINLSCRDNSILKNPEIVSAFSYAKENGK--NVHFMGLTSDGGVHSSLD 126          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gpmI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.215e-11
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            +++LDGWG     K + I    TP  D   ++ P     ++A G  VGLP +  MGNSEVGH  +GAGR+  Q    ++L+     I ++      F+Y K + +   +H +GL SDGGVHS  D
Sbjct:    7 LMILDGWGLGDHGKDDVIFNTATPYWDYLMETYPHSQ--LQASGENVGLP-DGQMGNSEVGHLNIGAGRVVYQDLVKINLSCRDNSILKNPEIVSAFSYAKENGK--NVHFMGLTSDGGVHSSLD 126          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_WOLPM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolbachia pipientis wMel GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.199e-11
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  140 VAVVVLDGWGE-YKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLV--DLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAKR 532
            V + +LDGWG   + +KYN I  A+ P       + P+    + A G+ VGLP    +GNSEVGH  +G+GR+  Q  + +  ++      +      N +K   + G  H++GL+SDGGVHS     S +A +
Sbjct:    6 VVLCILDGWGNGIENNKYNAISNANPPCWQYISSNYPKC--SLSACGADVGLPG-GQIGNSEVGHMNIGSGRVVIQSLQRINQEIGTIENNVNLQSFINDLKS--KNGVCHIMGLVSDGGVHSHQKHISTLANK 134          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CHRVO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromobacterium violaceum GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.199e-11
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAKRSQ 538
            V +++LDG+G       N I  A  P     ++     +  + A  + VGLP+    GNSEVGH  +GAGRI  Q    +D  +  G+   ++         +   LH++GLLSDGGVHS  +    + + +Q
Sbjct:    7 VLLLILDGFGHRTEGDDNAILHARMPVWSRLREQYA--YGTINASENFVGLPS-GQFGNSEVGHLNIGAGRIVQQDISRIDCDIEDGRFSSNDTLQQAMSKAQGSALHILGLLSDGGVHSHENHIHALIRAAQ 136          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens (strain SM101 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.484e-11
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRPD 508
            V +++LDG+G     + N +  A+ P  D      P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +   +  G  + ++     +  + E  T LHL+GLLS+GGVHS  D
Sbjct:    6 VMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTE--LQASGLEVGLP-EGQMGNSEVGHLNIGAGRIIYQELTRITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHID 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens GN=gpmI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.484e-11
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRPD 508
            V +++LDG+G     + N +  A+ P  D      P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +   +  G  + ++     +  + E  T LHL+GLLS+GGVHS  D
Sbjct:    6 VMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTE--LQASGLEVGLP-EGQMGNSEVGHLNIGAGRIIYQELTRITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHID 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CLOP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.162e-11
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRPD 508
            V +++LDG+G     + N +  A+ P  D      P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +   +  G  + ++     +  + E  T LHL+GLLS+GGVHS  D
Sbjct:    6 VMLMILDGFGISPNKEGNAVAAANKPNYDRLFAKYPHTE--LQASGLEVGLP-EGQMGNSEVGHLNIGAGRIIYQELTRITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHID 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SYMTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Symbiobacterium thermophilum GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.354e-11
Identity = 47/125 (37.60%), Postives = 62/125 (49.60%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRPD 508
            VA++VLDGWG     + N + +A  P  D      P     + A G AVGL     MG+S VGH  LGAGRI  Q    +  ++  G  Y    +  +  +       LHL+GL+SDGGVHS  D
Sbjct:    8 VALIVLDGWGLNPDPRANAVAMARHPNFDRLMARYPHT--TLTASGEAVGL-LPGQMGDSNVGHLNLGAGRIVYQTLVRIWRSIQDGSFYTLPVWRPVLDRAKQPGKALHLMGLVSDGGVHSHID 129          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_MOOTA2.462e-1137.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACTN2.462e-1137.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFR3.215e-1136.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFN3.215e-1136.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLPM4.199e-1133.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHRVO4.199e-1131.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPS5.484e-1137.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPE5.484e-1137.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOP17.162e-1137.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYMTH9.354e-1137.602,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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