DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.688e-17
Identity = 50/121 (41.32%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVH 496
            V + +LDGWG     + N + +ADTPT D    + P    +   HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K     GT HL+G++SDGGVH
Sbjct:    7 VVLCILDGWGLRAEREANAVALADTPTFDRLMATCPNATLVT--HGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIAKVKANGGTAHLMGVVSDGGVH 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PSYA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.688e-17
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFET-GTLHLIGLLSDGGVHSRPD 508
            +++LDG+G  + DK N I  AD P +D   +  P    L+ A G  VGLP +   GNSEVGH  LGAGR+  Q +  +   +AS   Y++E   N +K +    G +H++GLLSDGGVHS  D
Sbjct:   34 LMILDGFGHREDDKDNAIAAADMPNLDKIYEQYPHG--LISASGEDVGLP-DGQFGNSEVGHMNLGAGRVLYQDSTRISSEVASRDFYKNEALVNAVKAANTLGGNVHIMGLLSDGGVHSNQD 153          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SYNPX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain WH8102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.735e-17
Identity = 50/122 (40.98%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHS 499
            V + +LDGWG     ++N I   DTP M++   + P    L++A GS VGLP +  MGNSEVGH  +GAGRI  Q    +   +   ++        +    +  TGTLHL+GL SDGGVHS
Sbjct:   18 VVLTILDGWGHRNDSEHNAIRQGDTPVMEALWHAYPHA--LIQASGSHVGLP-DHQMGNSEVGHLTIGAGRIIRQELVRISDTVRDDQLNNTPALVELAEHLQNDTGTLHLLGLCSDGGVHS 136          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.735e-17
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVH 496
            V + +LDGWG     + N + +A+TPT D    + P    +   HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K   ++GT HL+G++SDGGVH
Sbjct:    7 VVLCILDGWGLRAEREANAVALAETPTFDRLMATCPNATLVT--HGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIGKVKAKSGTAHLMGVVSDGGVH 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_COXBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.735e-17
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAK 529
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS GGVHSR +  + + +
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPGGVHSRDNQIAALVE 140          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_COXBR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.735e-17
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAK 529
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS GGVHSR +  + + +
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPGGVHSRDNQIAALVE 140          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_COXBN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.735e-17
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAK 529
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS GGVHSR +  + + +
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPGGVHSRDNQIAALVE 140          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_RHOPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopseudomonas palustris GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.141e-16
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRPDPTSVVAK 529
            V +V+LDGWG  +    N +  A TPT D+   + P  +  +R  G +VGLP    MGNSEVGH  +GAGR+  Q    +  A+A+G+I +  G      K     GT HL+GL+S GGVHS  D    +AK
Sbjct:    7 VMLVILDGWGWREDPADNAVLQAKTPTFDALWTNGPHAF--LRTSGKSVGLPN-GQMGNSEVGHLNIGAGRVVMQDLPRISDAIANGEIERAPGLVAFIDKLKASGGTCHLMGLVSPGGVHSLQDHACALAK 135          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mycoides subsp. mycoides SC GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.141e-16
Identity = 58/155 (37.42%), Postives = 84/155 (54.19%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAKRSQ*AWCLNNPSFSLLLHGRE 592
            V + +LDGWG  +PDK N +  A+   ++  KK+ P  W    A G  VGLP E+ MGNSEVGH  LGAGRI  +    ++    +  I +++     F Y+K +     LHL+GL S+GGVHS  D    + K +   + + N  F L+  GR+
Sbjct:    7 VLLAILDGWGISEPDKGNAVDNANMVFVEYLKKTYP--WLKAHASGKWVGLP-ENQMGNSEVGHIHLGAGRINLESLAKLNHETKTNNIAKNDEIVKTFEYVKKN--NSALHLMGLFSNGGVHSHFDHMIAIYKAAI-DYGITNIKFDLITDGRD 155          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CELJU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cellvibrio japonicus (strain Ueda107) GN=gpmI PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.490e-16
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIK----PSFETGTLHLIGLLSDGGVHSRPD 508
            +S    V +++LDG+G  +  KYN ++ A TP  D+  K+ P    L+   G AVGLP    MGNSEVGH  +GAGR+  Q    ++ +++ G  + +    Y+K           +H++GLLS+GGVHS  D
Sbjct:    1 MSAKKPVVLLILDGYGYSERTKYNAVYAAQTPVYDNLWKTCPN--TLIDTSGMAVGLPA-GQMGNSEVGHTTIGAGRVVYQSFTRINKSISDGDFFTNP--EYVKAIDSAIANDRAVHILGLLSEGGVHSHQD 128          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_RHOS16.688e-1741.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYA26.688e-1742.282,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNPX8.735e-1740.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS48.735e-1740.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBU8.735e-1738.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBR8.735e-1738.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBN8.735e-1738.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOPA1.141e-1640.912,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMS1.141e-1637.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CELJU1.490e-1636.842,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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