DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_MICAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Microcystis aeruginosa (strain NIES-843) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.335e-16
Identity = 57/128 (44.53%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKY-NCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            V +V+LDGWG Y+P +  N I +A TP MDS  +  P    L+R     VGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++        I+P  +   LHLIGL S+GGVHS  D
Sbjct:    9 VVLVILDGWG-YRPQRSDNAIAMAKTPIMDSLWEVYPHT--LIRTSAKDVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGSIQQNQALLKLCAEIRP--KKSKLHLIGLCSEGGVHSHLD 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACLD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.335e-16
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  131 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHS 499
            N + A+++LDG+G       N +  A  P  D +    P +   + A G AVGLP +  MGNSEVGH  +GAGRI  Q    V++A+  G+  Q+E F   +K   E GT LHL GLLSDGGVHS
Sbjct:    3 NKLAALIILDGFGLRDETVGNAVAQAKKPNFDRYWNKYPHQ--TLTASGEAVGLP-DGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFEQNETFLAAMKHVKEKGTNLHLFGLLSDGGVHS 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_ANAVT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.335e-16
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHS 499
            V +V+LDGWG  +  + N I  A TP M+S   + P    L+   G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I  +     G LHL+GL S+GGVHS
Sbjct:    9 VVLVILDGWGYCEETRGNAIAAAKTPVMESLWTAYPHT--LIHTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSILSNSALVKICQEVRNRNGKLHLVGLCSEGGVHS 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_ANASP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena sp. (strain PCC 7120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.335e-16
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHS 499
            V +V+LDGWG  +  + N I  A TP M+S   + P    L+   G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I  +     G LHL+GL S+GGVHS
Sbjct:    9 VVLVILDGWGYCEETRGNAIAAAKTPVMESLWTAYPHT--LIHTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSILSNSALVKICQEVRNRNGKLHLVGLCSEGGVHS 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.662e-16
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRPD 508
            V +V+LDGWG       N +  A+TP +DS   + P    L++A G AVGLP    MGNSEVGH  LGAGR+  Q    +  A+ +G ++QD     +        G  H +GL S+GGVHS  D
Sbjct:    9 VVLVILDGWGYRDALDGNAVLAAETPVLDSLWAAYPHT--LLQASGRAVGLPA-GQMGNSEVGHLTLGAGRVVPQELVRISDAIETGSLFQDPLLMQVCRQLRERGGRFHFVGLCSEGGVHSHID 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.662e-16
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYI-KPSFETGTLHLIGLLSDGGVH 496
            V + +LDGWG     + N + +A+TPT D    + P    +   HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   ++    ++I K   + GT HL+G++SDGGVH
Sbjct:    7 VVLCILDGWGLRAEREANAVALANTPTFDRLMATCPNATLIT--HGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGTFARNPALCDFIAKVKAKGGTAHLMGVVSDGGVH 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_HALOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.662e-16
Identity = 52/130 (40.00%), Postives = 77/130 (59.23%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHS 499
            ++R   +A++++DG+G  +    N I  A TP +D F +  P+   ++ A G AVGLP E  MGNSEVGH  LGAGRI  Q    ++ A+  G + +++       ++K +     LHL+GLLSDGGVHS
Sbjct:    1 MNRPKPLALIIMDGFGLSEKSDGNAIKQAHTPNLDKFFEEYPDT--VLDASGEAVGLP-EGQMGNSEVGHLNLGAGRIVYQDYTRINKAIEEGTLPENDALKNAIQHVKDN--NSALHLMGLLSDGGVHS 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_FLAPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.662e-16
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  131 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHS 499
            N  V +++LDGWG+    K + I  A+ P ++S  K+ P     +R  G  VGLP E  MGNSEVGH  LGAGRI  Q    ++LA+ +  + Q+    E F Y K +     +H +GLLSDGGVHS
Sbjct:    2 NKKVILMILDGWGKSPDPKVSAIDNANIPFINSLYKNYPSAQ--LRTDGLNVGLP-EGQMGNSEVGHMNLGAGRIVYQDLAKINLAVQNKTLSQEKALKEAFQYAKEN--NKPIHFLGLLSDGGVHS 123          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_ROSDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.395e-16
Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRPDPTSVVAK 529
            ++R   VA+ +LDGWG  +  + N   +ADTP MD    + P     +   G  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        + +   GT HL+G++SDGGVH   +     AK
Sbjct:    1 MTRPKPVALCILDGWGLSERREGNAPLLADTPNMDRLMATCPHA--TLTTFGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEEGLFAQNSRLRAFIVTLQDSGGTAHLMGVVSDGGVHGHINHMIAAAK 135          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRPD 508
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGVHS  D
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPH--TLISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHED 128          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_MICAN4.335e-1644.532,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACLD4.335e-1644.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANAVT4.335e-1642.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANASP4.335e-1642.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJB5.662e-1640.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS55.662e-1640.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALOH5.662e-1640.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAPJ5.662e-1642.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ROSDO7.395e-1637.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCM1.261e-1540.462,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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