DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260474_ssr21 microsatellite DY260474_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRPD 508
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGVHS  D
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPH--TLISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHED 128          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_VIBC3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRPD 508
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGVHS  D
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPH--TLISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHED 128          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PSEE4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas entomophila (strain L48) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 49/132 (37.12%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRPDPTSVVAK 529
            + +++LDG+G  +  +YN I  A+TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++        K +     +H++GLLSDGGVHS  D    +A+
Sbjct:    8 LVLIILDGFGHSESPEYNAIFAANTPVYDRLRATQPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPVLTGAVDKAASAGKAVHILGLLSDGGVHSHQDHLIAMAE 136          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PROMP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 54/127 (42.52%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQ----DEGFNYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            V + +LDGWG  + +  N I  A+TP MDS   + P    L+ A G+ VGLP    MGNSEVGH  +G+GRI  Q    +   + + ++ Q     E  N IK   + GTLH+ GL SDGGVHS  D
Sbjct:   19 VVLAILDGWGHREENLDNAIKNANTPIMDSLWHAYPH--TLINASGADVGLP-NGQMGNSEVGHLTIGSGRIIQQELVRITNVVKNNQLTQVNELKEMANSIKK--KKGTLHITGLCSDGGVHSHID 140          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_HALSA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halobacterium salinarium GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHS 499
            A+V+LDGWG    D+ + +  ADTPT D + +     +  +   G  VGLP +  MGNSEVGH  +GAGR+  Q    ++ A+A+G +  ++  +          GTLH++GL+SDGGVH+
Sbjct:    4 ALVILDGWGLGDHDRRDAVRAADTPTFDEYAERGA--FGTLTTSGRDVGLP-DGQMGNSEVGHLTIGAGRVVKQAYTRIEDAIAAGDLCGNDAISGALDHVADTGGTLHVMGLVSDGGVHA 121          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CHRSD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRPDPTSVVA 526
            VA+++LDG+G+    +YN ++ A TP MD+ K+  P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+   ++  +      I  +   G  +HL+GLLS GGVHS  D    VA
Sbjct:   12 VALLILDGYGQNDDTEYNAVYSARTPVMDALKQRYPS--TLLHTDGKYVGLP-DGQMGNSEVGHMNLGAGRIVYQDFTRITKAIEDNELASNPVLTAPIDAAVAAGRAVHLLGLLSPGGVHSHEDHILAVA 139          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACHK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis subsp. konkukian GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHS 499
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHS 123          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACCZ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ZK / E33L) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHS 499
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHS 123          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHS 499
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHS 123          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACC1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 10987) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHS 499
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHS 123          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_VIBCH1.261e-1540.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBC31.261e-1540.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEE41.261e-1537.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMP1.261e-1542.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALSA1.261e-1538.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHRSD1.261e-1540.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACHK1.261e-1545.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCZ1.261e-1545.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCR1.261e-1545.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACC11.261e-1545.452,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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