DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus anthracis GN=gpmI PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHS 499
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHS 123          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_BACAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis (strain Al Hakam) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 55/121 (45.45%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHS 499
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHS 123          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.261e-15
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYI-KPSFETGTLHLIGLLSDGGVHS 499
            +++ DGWG  +  + N +  A TP +D  +K  P  W  ++A G AVGLP +  MGNSEVGH  +GAGRI  Q    +++++ +G  +++  F N I        +LHL+GL S GG+HS
Sbjct:   10 LIIFDGWGYREAKEGNAVMTARTPNLDRLEKECP--WCFLKASGEAVGLP-KGMMGNSEVGHLTIGAGRIVNQDLTRINISIKNGDFFKNPVFLNAISNVKANASSLHLMGLASCGGIHS 126          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.647e-15
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            V +V+LDGWG  +  + N +  A TP +DS   + P    L++A G AVGLP+   MGNSEVGH  LGAGR+  Q    +  A+ +G ++ +    E  + +K   + G  H IGL S+GGVHS  D
Sbjct:    9 VVLVILDGWGYREAPEGNAVLAARTPVVDSLWATYPHT--LLQASGRAVGLPS-GQMGNSEVGHLTLGAGRVVPQELVRISDAIETGSLFHEPLLVEVCHRLKE--QGGRFHFIGLCSEGGVHSHID 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_COLP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.647e-15
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRPD 508
            ++      +++LDGWG  +    N IH A+TP +D+ K   P    L+   G AVGLP E  MGNSEVGH  LGAGR+  Q    +  A++ G   ++    +   +  +    +H+ GLLS GGVHS  +
Sbjct:    1 MANKKSTVLMILDGWGYREETSSNAIHQANTPVLDNLKAKYPN--MLIDTSGMAVGLP-EGQMGNSEVGHVNLGAGRVVYQDFTRITKAISDGDFIENPTLCHAVDTATSNNKAVHIFGLLSPGGVHSHEE 128          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.151e-15
Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRPD 508
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGVH+  D
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPS--TLIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLD 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.151e-15
Identity = 53/124 (42.74%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET----GTLHLIGLLSDGGVHS 499
            V +V+LDGWG  +    N I  A+TP +D+F  + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    +  A+  G   +++    +K   ET      LHLIGL SDGGVHS
Sbjct:    9 VVLVILDGWGYRQEANANAIAAANTPNVDAFFATYPS--TLIHTSGKRVGLP-DGQMGNSEVGHLNLGAGRVVPQELVRISDAIEDGSFLRNDVL--VKVCRETRQAGKKLHLIGLCSDGGVHS 127          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_SYNE7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus elongatus (strain PCC 7942) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.151e-15
Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRPD 508
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGVH+  D
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPS--TLIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLD 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_OCEIH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Oceanobacillus iheyensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.151e-15
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHS 499
            +S+N + A+++LDG+      K N +  A+TP  D F          + A G AVGLP +  MGNSEVGH  +GAGRI  Q    V++++  G  Y+ + F  +          LHL GLLSDGGVHS
Sbjct:    1 MSQNKLAALIILDGFAIRDEVKGNAVKQANTPNFDRFWNQYAHNQ--LEASGKAVGLP-DGQMGNSEVGHLNIGAGRIVYQSLTRVNVSIDEGDFYEVDAFIKSVEHAKKHDKALHLFGLLSDGGVHS 125          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_NOSP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.151e-15
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHS 499
            V +V+LDGWG  +  + N I  A TP +DS   + P    L+R  G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I  +       LHL+GL S+GGVHS
Sbjct:    9 VVLVILDGWGYCEEKRGNAIVAAKTPIVDSLWAAYPHT--LIRTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSIALNPALVKICQEVRSRNSKLHLVGLCSEGGVHS 127          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_BACAN1.261e-1545.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACAH1.261e-1545.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF1.261e-1539.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJA1.647e-1540.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COLP31.647e-1536.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP62.151e-1541.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP22.151e-1542.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNE72.151e-1541.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_OCEIH2.151e-1539.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NOSP72.151e-1542.622,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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