DY260474

Overview
NameDY260474
Unique NameDY260474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.151e-15
Identity = 56/125 (44.80%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF-ETGT-LHLIGLLSDGGVHSRPD 508
            V +V+LDGWG  +    N I  A TP MDS  ++ P    LV   G AVGLP +  MGNSEVGH  LGAGRI  Q    +  A   G +  +     +     + GT LHL+GL SDGGVHS  D
Sbjct:    9 VVLVILDGWGYREELVGNAIAAAHTPVMDSLWQAYPH--TLVYTSGKAVGLP-KGQMGNSEVGHLNLGAGRIVPQELVRISDAAEDGSLAANPALVQVYEGVKQRGTKLHLVGLCSDGGVHSHLD 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI2_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina acetivorans GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.151e-15
Identity = 47/122 (38.52%), Postives = 72/122 (59.02%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHS 499
            +++LDGWG  +  + N I  A+TP ++S     P  W  +   G AVGLP E  MGNSEVGH  +GAGR+  Q    ++L++ +G  +++    +  + +K      +LHL+GL+S GGVHS
Sbjct:   16 LMILDGWGYREASEGNAILAAETPNLNSLLNEFP--WCFLECSGEAVGLP-EGQMGNSEVGHLNIGAGRVVYQDLTRINLSVRNGDFFENPVLLDAISNVK--LNDSSLHLMGLVSYGGVHS 132          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.810e-15
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSRPD 508
            VA++++DGWG  +    N I  A TP +D   K       L+ A G  VGLP    MGNSEVGH  LGAGR+  Q    V  A+  G  +++E    N  K   +   +H++GLLS GGVHS  D
Sbjct:    8 VALIIMDGWGHREDTTNNAIAHAKTPVLDRLTKETTNT--LISASGMDVGLPG-GQMGNSEVGHVNLGAGRVVYQDFTRVTKAIEDGDFFENEVLVSNVDKAIKQDKAVHIMGLLSPGGVHSHQD 129          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_LISMF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.810e-15
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHS 499
            VA+++LDG+G+      N +  A+ P  D +  + P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHS 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_LISIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria innocua GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.810e-15
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHS 499
            VA+++LDG+G+      N +  A+ P  D +  + P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHS 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_GEOKA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus kaustophilus GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.810e-15
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVHS 499
            VA+++LDG+        N +  A+ P  D +    P    +++A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F    N++K   + GT LHL GLLSDGGVHS
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--MLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHS 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI1_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.810e-15
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 2
Query:  146 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHS 499
            +++LDGWG  +  + N I  A TP +D   +  P  W  + A G AVGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  +++  F            +LHL+GL+S GGVHS
Sbjct:   13 LIILDGWGYREAREGNAILAARTPNLDHLIEEYP--WCFLEASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQDLTRINFSIRKGDFFKNPAFLGAISNAKANDSSLHLMGLVSYGGVHS 129          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pulmonis GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.670e-15
Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  128 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSRPD 508
            +N  V +VV+DG G  K    N   +A TP  D   K  P  W  ++A G  VGLP E  MGNSEVGH  +GAG+I   G  L++  L       ++ F  +    +    TLHL+GL+S GGVHS  D
Sbjct:    5 KNKKVILVVIDGLGLRKEKIGNAFELAKTPFFDKMFKEFP--WSFIQASGKFVGLP-EGQMGNSEVGHLNIGAGQIVYTGLSLINKDLEEKNFINNKAFLEVIEDVKKNNSTLHLMGLVSPGGVHSLED 130          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.670e-15
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHS 499
            VA+++LDG+G+      N +  A+ P  D +    P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHS 124          
BLAST of DY260474 vs. ExPASy Swiss-Prot
Match: GPMI_LISMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.670e-15
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHS 499
            VA+++LDG+G+      N +  A+ P  D +    P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHS 124          
The following BLAST results are available for this feature:
BLAST of DY260474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
GPMI_CYAP42.151e-1544.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METAC2.151e-1538.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA62.810e-1540.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMF2.810e-1540.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISIN2.810e-1540.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOKA2.810e-1543.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METBF2.810e-1540.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPU3.670e-1540.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW63.670e-1540.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMO3.670e-1540.162,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260474 ID=DY260474; Name=DY260474; organism=Citrus clementina; type=EST; length=1278bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTA
GGCCTGATCCAACTTCAGTTGTTGCTAAAAGGAGCCAGTGAGCGTGGTGC
CTAAACAATCCCTCCTTCTCACTCCTACTGCACGGGCGTGAGGTTTCTGG
ACTGGTTCAACCCCAGGATCCTACCAACCTACCGACACAGACCCTGCCGA
CCTCGCCTGCAAAAAGGGGCTTATCCACCACATCGCCACCCGCTACCGCC
GCCAGCTCCTTCCCACGCGCCCCGCACCCCCAATCACGCGCAACGTCGCC
CTAACAAACACAACGCATCACCCTGCTACTATCCTCCGGCCCCCACCGCC
CTTACCTAGCCACCTCTCTATTCTCTAGCCACACTCCATGTATCTCCTAC
CTACTCCAACCACTTTCCTTCTCCAACGCACTCGCCTGACACGATTGCAC
ACAAACAGACACCAGACACCCTACCGAACTCACCCCCCTCGCCCCCCACC
CCCCCCTCCCCCCCTCACTCCCTCTCCCCCCTCCCCCGTCAGCAATGTCT
AGGCGTACACCTAACCACCCTCCTACCCACCTGCTCACTTAACCAACTCA
CTCACGTTACTCCCCATCCCCATCCCGACCCCCTACCATATCCCATCATC
ACACCCCTATCAACCGAATGCTAATCGACGTCATAGTCACCCCTAAACAC
ACTCCCATATCTACCATTCCTAACACAATCCATCTACCAACAAACAACAC
ACATACCCTCCCGCACCAAACGCCCACTATCCAACTTGCGCCAACCCACT
ACCAACACGACTTACTAACCCTCACACG
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