DY260532

Overview
NameDY260532
Unique NameDY260532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1230
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.371e-34
Identity = 84/203 (41.38%), Postives = 116/203 (57.14%), Query Frame = 2
Query:  101 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKFLHGH 706
            TD   LQD CVA  D K  V VNG  CK    A  E  F S +   G+  AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH HPRA+E+ +VL G L VG + +  + N   +KV+  G+ FV P+GL+HFQFN+GKT A    + N Q PG V +  T+ G++P I      KA  ++   ++    KF  G+
Sbjct:   29 TDADPLQDFCVADLDSK--VTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKSKFTGGY 229          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.509e-34
Identity = 84/203 (41.38%), Postives = 115/203 (56.65%), Query Frame = 2
Query:  101 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKFLHGH 706
            TD   LQD CVA  D K  V VNG  CK    A  E  F S +   G+  AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH HPRA+E+ +VL G L VG + +    N   +KV+  G+ FV P+GL+HFQFN+GKT A    + N Q PG V +  T+ G++P I      KA  ++   ++    KF  G+
Sbjct:   29 TDADPLQDFCVADLDSK--VTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGGY 229          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.673e-33
Identity = 83/203 (40.89%), Postives = 114/203 (56.16%), Query Frame = 2
Query:  101 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKFLHGH 706
            TD   LQD CVA  D    V VNG  CK    A  E  F S +   G+  AN  G + T+ +V + PG+NTLG+S  R+D+AP G  PPH HPRA+E+ +VL G L VG + +    N   +KV+  G+ FV P+GL+HFQFN+GKT A    + N Q PG V +  T+ G++P I      KA  ++   ++    KF  G+
Sbjct:   27 TDADPLQDFCVA--DLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGGY 227          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.727e-33
Identity = 81/204 (39.71%), Postives = 113/204 (55.39%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVN-------GKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            DP  +QD CVA+  P+ G           G  CK      ++DFF++GL    +T NR G + T AN E  PGLNTLG+S  R+D AP G  P H HPRA+E+  V+ G +  GFV++        +KVL +G+ FV P+G+IHFQ+N+G   A   +A N Q PG V   +T+ G+ P I      K+F ++ K +K    KF
Sbjct:   26 DPEPVQDFCVAVV-PRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVST---AGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLKSKF 225          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.850e-32
Identity = 84/202 (41.58%), Postives = 113/202 (55.94%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNT-ANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKFLHGH 706
            DP  LQD CVA  D +  V +NG  CK    A  E  F S L   G+  AN  G + T  +V   PG+NTLG+S  RID+AP G  PPH HPRA+E+ +VL G L VG + S    N   ++V+  G+ FV P+GL+HFQFN+GKT A    + N Q PG V +  T+ G++P I      KA  ++   ++    KF  G+
Sbjct:   28 DPDPLQDFCVADLDSE--VTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGGY 227          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.566e-31
Identity = 76/201 (37.81%), Postives = 110/201 (54.73%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKF----CKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            DP  +QD CVA+  P+ G   +  +    CK      ++DFF++GL   G+T N  G      NVE  P LNTLG++  R+D AP G  P H HPRA+E+  V+ G + VGFV++        +KV+ +G+ F  P+GL+HFQ+N G  +A A +  N Q PG V  A  + GA P I      K+F ++ + +K    KF
Sbjct:   36 DPEPIQDFCVAV--PRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVST---AGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLKSKF 231          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.556e-31
Identity = 79/192 (41.15%), Postives = 108/192 (56.25%), Query Frame = 2
Query:  119 QDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            QD CVA  D +     +G  CK      +EDFFYSGL  P NT+N  G+    AN+   PGLNTLGIS + +  AP G   PH HP  +E  +V+EG++ VGF+T+   N TL +KV+  GD+FV P GLIH++ N+GKT     + +    P EV + +T+L   P+I       AF  + KT+     KF
Sbjct:   41 QDFCVA--DLQATPTNSGYPCKSQ--VTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTT---NYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLRSKF 225          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.731e-30
Identity = 76/160 (47.50%), Postives = 89/160 (55.62%), Query Frame = 2
Query:  101 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPG 580
            T    +QD CVA     DG    G  CK P +    DF YSGLG  GNT N      T A   Q PG+N LGIS  R+D  P G  P H HP ASE+ LV++GT+  GFV SD   NT   K L KGD+ VFPQGL+HFQ N G T A A+ + +   PG
Sbjct:   15 TSHASVQDFCVADYKAPDGPA--GYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPG 169          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.261e-30
Identity = 76/183 (41.53%), Postives = 103/183 (56.28%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAF 652
            D   LQD+CVA  D +    V+G  CK      ++DFF   + +  +T+N  GV+ T A V   PGLNTLG+S  R D AP G  PPH HPRASE+ LVL G + VGF T+    N L +KV+ + ++FV P+GL HFQ N+G  NA+  +  + Q PG VT    +    P++      K F
Sbjct:   30 DSPPLQDICVA--DLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTA---ANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTF 207          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.592e-30
Identity = 79/201 (39.30%), Postives = 106/201 (52.74%), Query Frame = 2
Query:  101 TDPGHLQDVCVA--INDP-KDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            +DP  +QD C+   +  P  D  F     CK+      EDF +SGL   GN     G        E  PGLNTLGIS  R D  P    PPH+HPRA+E+  +++G +Y GFV S   NN + AKV+ +G++ V+P+GL+HFQ N+G   A     LN Q PG   I + V G+   IN     KAF L+ K +    K+F
Sbjct:   25 SDPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLKTAGNFTET-GFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDS---NNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGS--GINEELLMKAFGLSLKQIGTLKKRF 219          
The following BLAST results are available for this feature:
BLAST of DY260532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL34_ORYSJ3.371e-3441.38Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL36_ORYSJ7.509e-3441.38Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ1.673e-3340.89Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ3.727e-3339.71Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL33_ORYSJ1.850e-3241.58Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL37_ORYSJ1.566e-3137.81Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GLT3_ARATH4.556e-3141.15Germin-like protein subfamily T member 3 OS=Arabid... [more]
AB19B_PRUPE1.731e-3047.50Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL12_ORYSJ2.261e-3041.53Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL32_ARATH8.592e-3039.30Germin-like protein subfamily 3 member 2 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YM20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260532 ID=DY260532; Name=DY260532; organism=Citrus clementina; type=EST; length=1230bp
GTTTGAGATAGGCCTTTCCTGTGACTTAATCACCATGAAGGTAATTCAAT
TTCTTATAGGTTTTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCC
ACTGACCCTGGCCATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAA
GGATGGTGTGTTTGTGAATGGGAAGTTCTGTAAGGACCCCAAGCTTGCGA
GAGCAGAAGATTTCTTCTACTCAGGGCTAGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCCAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGCATTGACTATGCCCCATATG
GCCAAAGGCCACCTCACTTTCACCCCCGTGCCAGTGAAATCTTCTTAGTC
CTGGAAGGAACTCTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCGCAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCAC
AAGGTTTGATTCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCT
TATTCTGCTCTAAACCGCCAATTCCCGGGTGAAGTTACCATAGCCAACAC
AGTCCTTGGAGCCCATCCTTCAATCAATCCCCATTTTCCTGGCAAGGCAT
TCCCATTGAATCCAAAGACACTGAAAGATCCTCCAAAAAAGTTCCTTCAT
GGCCATTAACGAGAAGGAATTAATGAACCTTTAATAAAATCGGCCCCCTT
CCCAAAGGGCTTTATTACCCCTACCCCCCAAATACCCTATCCTAACCAAG
GCAAAAACACAACTCCCCCCCCGACCCCCCCCCCCCCCGCCAACCGCTGC
CCAGTCAAACACCCCACATTCCTAATTGCCTTTATTTATACCCCCCCCAC
CCCTTGTCCAAAAAAAAAACAAACACAAACAACCAAACTCCCACCTCCCC
TTCCCCCAGAACATCGCACATACACCCAAGCGCATCCCTAATCCCCTCTT
TCCAAGCCCCAATCCACCCCCCTCACGGATCTGACCGCAACACTAATACA
CTCTTTTACCCTCCTCCTCCTCTCATCTACCCCCTCCTCCTCACATCACT
ACTCTCACCCACTACCCCTCATTCACACTATCTCTTTCCCCTCCCTCCTC
CTCCCCCCCTCTCCACCCTCCTTCCACCCTCCCTCTCCCCCACCTCCCCA
CTCTCCCTCTCACCTTCACCGCGACCCCCC
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