DY260532

Overview
NameDY260532
Unique NameDY260532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1230
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.592e-30
Identity = 75/155 (48.39%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPG 580
            +QD CVA     DG    G  CK P      DF YSGLG  GNT N +    T A   Q PG+N LGIS  R+D  P G  P H HP ASE+ LV++GT+  GFV SD   NT   K L KGD+ VFPQGL+HFQ N G T A A+ + +   PG
Sbjct:   20 VQDFCVADYKAPDGPA--GYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPG 169          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.914e-29
Identity = 81/201 (40.30%), Postives = 104/201 (51.74%), Query Frame = 2
Query:  104 DPGHLQDVCV---AINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDY-APYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            DP  +QD CV       P +   +    C+ P    A DF +SG+   GN +   G         Q PGL+TLG+S  R D  A  G  PPH+HPRA+E  LVL G +Y GFV S      L AKVL +G+V VFP+ ++HFQ N+G T A  Y A N + PG V I  TV G+   I      +AF L P  L+   K+F
Sbjct:   24 DPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDS---GGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAFGLTPAELRRLEKRF 219          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 5.569e-29
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 2
Query:  101 TDPGHLQDVCVAINDPK-DGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANR-LGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAA-AYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLN 661
            +DP  LQD CV+        +F+NGK CKDP  A   DF  S L +PGNT  +   ++ T      +PGLNT+G++  R+D+   G  PPH HPRASE+ + L+G L VGFV +   +  +  + L+ G+ FVFP+GLIHF +NI   ++A A S L+ Q PG   ++ +   + P         A+ +N
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDT---SGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDIN 204          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.042e-28
Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPG 580
            +QD CVA     +G    G  CK P   +  DF +SGLG  GNT+N +    T A V Q PG+N LGIS  R+D A  G  P H HP ASE+ +V +GT+  GFV SD   NT   + L KGD+ VFPQGL+HFQ N G+  A A+++     PG
Sbjct:   25 VQDFCVADLAAPEGPA--GFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD---NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPG 174          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.050e-27
Identity = 71/155 (45.81%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPG 580
            +QD CVA  + K      G  C  P   +A DF +SGLG PGNT N +    T A   Q PGLN LG+S  R+D AP G  P H HP ASE+  VL G++  GFV+S    N +  + L  G V VFPQGL+HFQ N GK++A+A    N   PG
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSS---ANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPG 168          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.056e-27
Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPG 580
            +QD CVA  DPK     +G  CK+P      DF ++GLG  GNT+N +    T A      G+N LG+S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K LN+GD  VFPQGL+HFQ N GK  A A+ A     PG
Sbjct:   22 VQDFCVA--DPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.991e-27
Identity = 69/155 (44.52%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPG 580
            +QD CVA  DPK     +G  CK+P      DF +SGLGK GNT+N +    T A      GLN L +S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K L++GD  VFPQGL+HFQ N GK  A A+ A     PG
Sbjct:   22 VQDFCVA--DPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.517e-26
Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTI 592
            D  ++QD C      +   F+NG  CK+P    A+DF  + L + G+T N L  + T     + PGLNTLG+S  R D    G  P H HPR+SE+  V++G ++ GFV +   NN +   VL KGDVFVFP+GL+HF  + G   A A+S  N Q PG V I
Sbjct:   19 DSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDT---NNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNI 178          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.527e-26
Identity = 80/192 (41.67%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  116 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPG-----EVTIANTVLGAHPSINPHFPGKAFPLNPKTLK 676
            +QD CVA  + K      G  C  P   +A DF +S LG PGNT N +    T   V Q P LN LGIS  R+D AP G  P H HP ASE+  VL+G++  GF++S    N++  + L  G V VFPQGL+HFQ N GKT AAA    +   PG         ANT+     S     P    P   KTLK
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS---ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANTLSTELVSATTFLP----PATVKTLK 200          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.879e-25
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  119 QDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPG 580
            QD CVA N P      +G  C+      A DF+   L +PG            A V+Q P +N LGISA R+D  P G  P H HP  SE+  VL+G L  GF++S   +N +  K ++KG +FVFPQGL+HFQ+N G T A A++A +   PG
Sbjct:   29 QDFCVA-NLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSS--DNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPG 179          
The following BLAST results are available for this feature:
BLAST of DY260532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
AB19A_PRUPE8.592e-3048.39Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL24_ORYSJ1.914e-2940.30Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH5.569e-2938.42Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
ABP20_PRUPE8.042e-2845.81Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL31_ARATH1.050e-2745.81Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GL33_ARATH3.056e-2743.87Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_SINAL3.991e-2744.52Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL34_ARATH1.517e-2641.72Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GLP1_BRANA7.527e-2641.67Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL813_ORYSJ4.879e-2541.56Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YM20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260532 ID=DY260532; Name=DY260532; organism=Citrus clementina; type=EST; length=1230bp
GTTTGAGATAGGCCTTTCCTGTGACTTAATCACCATGAAGGTAATTCAAT
TTCTTATAGGTTTTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCC
ACTGACCCTGGCCATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAA
GGATGGTGTGTTTGTGAATGGGAAGTTCTGTAAGGACCCCAAGCTTGCGA
GAGCAGAAGATTTCTTCTACTCAGGGCTAGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCCAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGCATTGACTATGCCCCATATG
GCCAAAGGCCACCTCACTTTCACCCCCGTGCCAGTGAAATCTTCTTAGTC
CTGGAAGGAACTCTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCGCAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCAC
AAGGTTTGATTCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCT
TATTCTGCTCTAAACCGCCAATTCCCGGGTGAAGTTACCATAGCCAACAC
AGTCCTTGGAGCCCATCCTTCAATCAATCCCCATTTTCCTGGCAAGGCAT
TCCCATTGAATCCAAAGACACTGAAAGATCCTCCAAAAAAGTTCCTTCAT
GGCCATTAACGAGAAGGAATTAATGAACCTTTAATAAAATCGGCCCCCTT
CCCAAAGGGCTTTATTACCCCTACCCCCCAAATACCCTATCCTAACCAAG
GCAAAAACACAACTCCCCCCCCGACCCCCCCCCCCCCCGCCAACCGCTGC
CCAGTCAAACACCCCACATTCCTAATTGCCTTTATTTATACCCCCCCCAC
CCCTTGTCCAAAAAAAAAACAAACACAAACAACCAAACTCCCACCTCCCC
TTCCCCCAGAACATCGCACATACACCCAAGCGCATCCCTAATCCCCTCTT
TCCAAGCCCCAATCCACCCCCCTCACGGATCTGACCGCAACACTAATACA
CTCTTTTACCCTCCTCCTCCTCTCATCTACCCCCTCCTCCTCACATCACT
ACTCTCACCCACTACCCCTCATTCACACTATCTCTTTCCCCTCCCTCCTC
CTCCCCCCCTCTCCACCCTCCTTCCACCCTCCCTCTCCCCCACCTCCCCA
CTCTCCCTCTCACCTTCACCGCGACCCCCC
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