DY260554

Overview
NameDY260554
Unique NameDY260554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1119
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYM_RAT (Pyruvate kinase isozymes M1/M2 OS=Rattus norvegicus GN=Pkm2 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 3.737e-13
Identity = 51/176 (28.98%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  198 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATLAGSLFPYLP 692
            T I+ T+GP SRSV+++   +K+GM+VAR +FS G  EYH ET++N++AA ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    +L +++  + K V+ G  I++   L +        L+V E   + +   ++N  +L       LP
Sbjct:   45 TGIICTIGPASRSVEMLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRAATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLIS--------LQVKEKGADYLVTEVENGGSLGSKKGVNLP 212          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYM_FELCA (Pyruvate kinase isozyme M1 OS=Felis catus GN=PKM2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.881e-13
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  198 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 578
            T I+ T+GP SRSV+++   +K+GM+VAR +FS G  EYH ET++N++AA ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    VL +++  + K V+ G  +++   L +
Sbjct:   45 TGIICTIGPASRSVEILKEMIKSGMNVARLNFSHGTHEYHAETIKNVRAATESFASDPIRYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENVLWLDYKNICKVVEVGSKVYVDDGLIS 182          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYK_LEIME (Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.375e-13
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  201 KIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVN--KSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFI 560
            +I+ T+GP ++SV+ + G +++GMSVAR +FS G+ EYHQ T+ N++ A        A+ LDT GPE++       +  +   A   V   P    + T     I++  L+K V+ G+ I+I
Sbjct:   23 RIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYI 144          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYM_MOUSE (Pyruvate kinase isozymes M1/M2 OS=Mus musculus GN=Pkm2 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 1.420e-12
Identity = 50/176 (28.41%), Postives = 90/176 (51.14%), Query Frame = 3
Query:  198 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATLAGSLFPYLP 692
            T I+ T+GP SRSV+++   +K+GM+VAR +FS G  EYH ET++N++ A ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    +L +++  + K V+ G  I++   L +        L+V E   + +   ++N  +L       LP
Sbjct:   45 TGIICTIGPASRSVEMLKEMIKSGMNVARLNFSHGTHEYHAETIKNVREATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLIS--------LQVKEKGADFLVTEVENGGSLGSKKGVNLP 212          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYK_ASPNG (Pyruvate kinase OS=Aspergillus niger GN=pkiA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.420e-12
Identity = 49/153 (32.03%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  117 SSHLLLEEPIRMASILEPSKASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT-TKKLCAVMLDTVGPELQVVN-KSEKAISLKADGSVVLTPDCGQEATS---QVLPINFDGLAKSVKKGDTIFI 560
            S+ + LE   ++ + + PSK       T I+GT+GPK+ SV+ I+    AG++V R +FS G+ +YHQ  ++N + A KT   +  A+ LDT GPE++  N   +K I +K    + +T D  Q AT+   + + +++  + K +  G  I++
Sbjct:   11 SNRMKLEWHSKLNTEMVPSKNF---RRTSIIGTIGPKTNSVEKINSLRTAGLNVVRMNFSHGSYQYHQSVIDNAREAAKTQVGRPLAIALDTKGPEIRTGNTPDDKDIPIKQGHELNITTD-EQYATASDDKNMYLDYKNITKVISPGKLIYV 159          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYK_CLOAB (Pyruvate kinase OS=Clostridium acetobutylicum GN=pyk PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.855e-12
Identity = 49/161 (30.43%), Postives = 80/161 (49.69%), Query Frame = 3
Query:  198 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQV--LPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATLAGS 674
            TK++ T+GP S + ++++  +KAGM+ +R +FS G+   H   +  +K       K  A+ LDT GPE++  + +   + L+      +   CG+E         I++  L K VK G+TI I   L        V L V  ++G +V C + NT  L GS
Sbjct:    4 TKMIFTVGPASETEEIVTAFIKAGMNASRHNFSHGDHAEHGGRIALVKKVRAKLNKPVAICLDTKGPEIRTGDFNPSKLELQKGSKFTIV--CGEEIVGDATKCSISYKDLYKDVKPGNTILIDDGL--------VGLTVEAIEGTNVICTVANTG-LVGS 153          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYK_STAHJ (Pyruvate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pyk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.422e-12
Identity = 52/168 (30.95%), Postives = 83/168 (49.40%), Query Frame = 3
Query:  198 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEV---KGNDVTCVIKNTATLAGSLFPYLP 692
            TKIV T+GP S S +++   +KAGM+VAR +FS G+ E H+  ++ ++       K   ++LDT GPE++  +  +  I L+  G  V+      E T +   + ++ L   V+ G  I +   L        V L+V ++   KG +V C I NT  L       LP
Sbjct:    4 TKIVCTIGPASESEEMLEKLMKAGMNVARLNFSHGSHEEHKARIDTIRKVADRLGKTIGILLDTKGPEIRTHDMKDGLIMLE-KGKEVIVSMSQVEGTPEKFSVTYEDLINDVQVGSYILLDDGL--------VELQVKDIDKTKG-EVKCDILNTGELKNKKGVNLP 161          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYM_PONAB (Pyruvate kinase isozyme M1 OS=Pongo abelii GN=PKM2 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 3.164e-12
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  198 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 578
            T I+ T+GP SRSV+ +   +K+GM+VAR +FS G  EYH ET++N++ A ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    +L +++  + K V+ G  I++   L +
Sbjct:   45 TGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLIS 182          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYM_HUMAN (Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM2 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 3.164e-12
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  198 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 578
            T I+ T+GP SRSV+ +   +K+GM+VAR +FS G  EYH ET++N++ A ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    +L +++  + K V+ G  I++   L +
Sbjct:   45 TGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLIS 182          
BLAST of DY260554 vs. ExPASy Swiss-Prot
Match: KPYK_XENLA (Pyruvate kinase muscle isozyme OS=Xenopus laevis GN=pkm PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.164e-12
Identity = 44/138 (31.88%), Postives = 75/138 (54.35%), Query Frame = 3
Query:  198 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTK------KLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 578
            T I+ T+GP SRSV+++   +K+GM++AR +FS G  EYH  T++N++ A ++        +  AV LDT GPE++   +       + LK   ++ +T D    +     VL +++  L K VK G  I++   L +
Sbjct:   41 TGIICTIGPASRSVEMLKEMIKSGMNIARLNFSHGTHEYHAGTIKNVREATESLASNPIHYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATMRITLDDAFQENCDENVLWVDYKNLTKVVKPGSKIYVDDGLIS 178          
The following BLAST results are available for this feature:
BLAST of DY260554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
KPYM_RAT3.737e-1328.98Pyruvate kinase isozymes M1/M2 OS=Rattus norvegicu... [more]
KPYM_FELCA4.881e-1331.88Pyruvate kinase isozyme M1 OS=Felis catus GN=PKM2 ... [more]
KPYK_LEIME6.375e-1333.61Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1... [more]
KPYM_MOUSE1.420e-1228.41Pyruvate kinase isozymes M1/M2 OS=Mus musculus GN=... [more]
KPYK_ASPNG1.420e-1232.03Pyruvate kinase OS=Aspergillus niger GN=pkiA PE=3 ... [more]
KPYK_CLOAB1.855e-1230.43Pyruvate kinase OS=Clostridium acetobutylicum GN=p... [more]
KPYK_STAHJ2.422e-1230.95Pyruvate kinase OS=Staphylococcus haemolyticus (st... [more]
KPYM_PONAB3.164e-1231.16Pyruvate kinase isozyme M1 OS=Pongo abelii GN=PKM2... [more]
KPYM_HUMAN3.164e-1231.16Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=... [more]
KPYK_XENLA3.164e-1231.88Pyruvate kinase muscle isozyme OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YO03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260554 ID=DY260554; Name=DY260554; organism=Citrus clementina; type=EST; length=1119bp
ATCAACGAATAAACTATAAAATTCCAAACACTCTAATCAACGCTAACCGC
TGCCTCTTTCATCTCTCGTACTCTCTCTGTATCTCTCTGTATCTCTCTGT
TCAGTGAAAGATGCATTCCAGTCACTTGCTTCTCGAGGAGCCAATCAGGA
TGGCTTCCATCCTGGAGCCATCCAAAGCCAGTTTCTTCCCGGCAATGACC
AAAATTGTCGGAACGCTTGGTCCTAAATCTCGATCTGTTGATGTTATATC
CGGTTGCCTCAAAGCTGGAATGTCTGTGGCTAGATTCGATTTCTCGTGGG
GTAATACTGAATACCACCAAGAGACCTTGGAGAATCTCAAGGCGGCAGTT
AAGACTACTAAGAAGCTTTGTGCTGTTATGTTGGACACAGTGGGTCCCGA
ATTGCAGGTTGTTAATAAGAGTGAGAAGGCAATTTCACTTAAGGCAGATG
GTTCTGTTGTTCTCACACCTGACTGTGGACAAGAAGCCACTTCTCAAGTT
TTGCCCATCAATTTCGATGGACTTGCTAAGTCAGTGAAGAAAGGAGACAC
CATTTTTATCGGTCAATACTTGTTCACTGGAAGTGAGACTACTTCTGTGT
GGCTGGAGGTTTCTGAAGTGAAAGGAAATGATGTAACTTGTGTGATAAAG
AATACTGCAACGTTGGCTGGTTCCCTTTTCCCTTACCTGCCTCCCAATTC
CTATTGAACTGCCCACTCTTTCCGATAAAGATAAGGAGGTCCATTATTCT
TGGGGAGTTCCAAACAAAATTGACTTCCCCCCCTTGTCCCAAACCCCAAC
TGCCAAAAAACCTGCCCCCCCAGCCCCCCCAATTACTCCCCCCATTTGGG
TGACCCTCCCTCCAACCCCCAATTTTTCCCAAAAATCAAAAAAAAAAGGG
TTTGCCCCCTTTTTTAAGAACTCCTCCACCCCCCAAAAGGAATTATTCCC
TCCCCCGGGAAAATTGGGAACACCCCCCCTCCCCCCCGCAAAGGGTTTTC
CTGCTTCCCAAACCCTCCCCCCTTTTAACAGCTAAACTCAGCGCGCGAAA
CCCCCACCCACGGGTTCTCCCCGCTGTGTTCGGCACCAAAAAATCCAGAC
ACAACCACCGCGACAAACC
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