DY260562

Overview
NameDY260562
Unique NameDY260562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: RPN8_ASHGO (26S proteasome regulatory subunit RPN8 OS=Ashbya gossypii GN=RPN8 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.510e-37
Identity = 74/141 (52.48%), Postives = 105/141 (74.47%), Query Frame = 3
Query:   81 EKVLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            E+V V PLVLLS++ +Y R+     KR VGVLLG +   T+ V++S+A+PFEED+K+P +WFLDHNY E+M  M K+INAKE ++GWY +GPKLR +DL I+ LF  Y   N +L+I+DV+ + +G+PT AY  +EEVK++
Sbjct:    6 EQVNVAPLVLLSVLDHYKRMNTPDNKRCVGVLLGDNSGSTIKVTNSFALPFEEDEKNPDVWFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLKINGLFKKYTQGNSLLLIVDVKQQGVGLPTDAYMAIEEVKDD 146          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.181e-16
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 3
Query:   93 VHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFK-GTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID 434
            +HPLV+ ++   + R P D+ +RV+G LLGS    GTVD+ +SYAVP  E      +   D +YH +M +   ++N+KE +VGWYSTG  +      IH  +   VPNP+ + +D
Sbjct:   30 IHPLVIFNVCDCFVRRP-DSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVD 140          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.578e-15
Identity = 41/129 (31.78%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAY 473
            V +HP++L SIV +Y R   +   RV+G LLG+  K +V+V++ ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY 220          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.578e-15
Identity = 41/129 (31.78%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAY 473
            V +HP++L SIV +Y R   +   RV+G LLG+  K +V+V++ ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY 220          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.578e-15
Identity = 41/129 (31.78%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAY 473
            V +HP++L SIV +Y R   +   RV+G LLG+  K +V+V++ ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY
Sbjct:   92 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY 216          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.593e-15
Identity = 41/129 (31.78%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAY 473
            V +HP++L SIV +Y R   +   RV+G LLG+  K +V+V++ ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAY 220          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROMO (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila mojavensis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.078e-14
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++NA E+VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANENVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQSGRMGLRAYICIQ 136          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_ANOGA (Eukaryotic translation initiation factor 3 subunit F OS=Anopheles gambiae GN=eIF3-S5 PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 8.662e-14
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAY 473
            V VHP+VL  IV  Y R   D+ +RV+G LLGS  KG V+V++ + +P +E          +  Y   +Y + +R+NA E++VGW++TG ++  +   IH+ +     NPV + +D       +  KAY
Sbjct:   12 VRVHPVVLFQIVDAYERRNADS-ERVIGTLLGSVDKGVVEVTNCFCLPHKEHTDQVEA---ELGYASDLYELNQRVNASENIVGWWATGQEVTNHSSVIHEYYARECTNPVHLTLDTSLTGARMGIKAY 136          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_AEDAE (Eukaryotic translation initiation factor 3 subunit F OS=Aedes aegypti GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.477e-13
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAY 473
            V VHP+VL  IV  Y R   D+ +RV+G LLGS  KG V+V++ + VP +E          +  Y   +Y + +R+N  E++VGW++TG ++  +   IH+ +     NP+ + +D       +  KAY
Sbjct:   12 VRVHPVVLFQIVDAYERRNADS-ERVIGTLLGSVDKGVVEVTNCFCVPHKEHADQVEA---ELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLSAARMGIKAY 136          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROWI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila willistoni GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.477e-13
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG ++  +   IH+ +     NPV V +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYELNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHVTVDTSLQGGRMGLRAYVCIQ 136          
The following BLAST results are available for this feature:
BLAST of DY260562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RPN8_ASHGO9.510e-3752.4826S proteasome regulatory subunit RPN8 OS=Ashbya g... [more]
EIF3F_ARATH3.181e-1639.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR1.578e-1531.78Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA1.578e-1531.78Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN1.578e-1531.78Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE4.593e-1531.78Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROMO5.078e-1433.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ANOGA8.662e-1434.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_AEDAE1.477e-1333.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROWI1.477e-1333.08Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YO13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260562 ID=DY260562; Name=DY260562; organism=Citrus clementina; type=EST; length=1234bp
GAGAGCCAAAGTCCCTACCAACACCGAGAGATTCCAATATGGACGTGATA
AAGACCCCGCCAATTTCCTCGAGACCCATAGAGAAGGTCCTAGTTCACCC
GCTCGTCCTACTAAGCATCGTCCACAATTACCACCGCGTCCCCCAGGACA
CGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCTCCTTCAAAGGCACC
GTCGATGTCTCCCACAGCTACGCAGTGCCTTTTGAGGAAGATGACAAAGA
CCCAGGAATATGGTTTCTCGACCACAACTACCATGAATCAATGTATTCAA
TGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAGGTTGGTACAGTACA
GGACCCAAGCTACGAGAGAATGATCTTGACATTCACCAATTATTTCACAA
CTATGTCCCAAATCCTGTATTGGTCATTATTGATGTCCAACCAAAGGAGC
TTGGAATACCCACCAAGGCTTACTATGATGTTGAGGAGGTTAAAGAGAAT
GCCACCCCGAAAAAGCCAAAGGTCCTTGTACCCGTGCCCCTCCGAACTCG
CCCGCTCCTGAAGTCCAAACAACCCGGAGTGGAGCCCTTGGCCTAGGGAC
GCCACAGACCCCCCCCTCCAGCACCCTTGGCATTGACGGTCCATCACATC
CTTGTCCCTCTTGACCTAATCTATCTTTCACCTCGGCCCGCTGCCTTCCC
ACGTCGCGTTGCGGCCCCCCCCCTCCCTTCCCCTCCCTCTCCCTCCCCCG
CGACCGCCCCCGCCTCCCCCCCAACTCGCCGGCCAACACACCGTTCATCG
CATCCCTCCGCCCCAAGGCCACTCCCCCAACTCCCCCCCCCCTCACCCAC
CCACGACCTCCCTCCTCCCCCCCCCCCTCGCCCCGCCCTCCGCAGCCCCG
CACCCCCAGCACCACCAATCCCACTTACTCGCCCAACCCGACTTTCACCC
TCCCCACCCCACGCCGCTACTCACCACTGACACTGACCACACGCCTCGTG
TTCCTCCACCTTAACCTCCTTTCTGTCTACTGTCCCGCCCGCCCCCCTGC
CCGTCTGCTCCCATCCACCTACTGCCGCACCCCCGGCCACCCCTGTCTTC
CGCTCCCCCTCCCTGGCACGTCCTCCGTTCCACTCCCCTCTCTCTCATCC
ATACACCCCCCCCACCCCCCCTGACCTCCTACCTCACTCCCTCGTGCCTC
TCCTCCTCTTACTGCCCTTACTTCTTGCCCCTCC
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