DY260562

Overview
NameDY260562
Unique NameDY260562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROVI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila virilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.477e-13
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++NA E VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQ 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_CULQU (Eukaryotic translation initiation factor 3 subunit F OS=Culex quinquefasciatus GN=eIF3-S5 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.520e-13
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAY 473
            V VHP+VL  IV  Y R   D+ +RV+G LLGS  KG V+V++ + VP +E          +  Y   +Y + +R+N  E++VGW++TG ++  +   IH+ +     NP+ + +D       +  KAY
Sbjct:   12 VRVHPVVLFQIVDAYERRNADS-ERVIGTLLGSVEKGIVEVTNCFCVPHKEHADQVEA---ELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLTAARMGIKAY 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROGR (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.291e-13
Identity = 43/133 (32.33%), Postives = 74/133 (55.64%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQ 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.291e-13
Identity = 44/133 (33.08%), Postives = 72/133 (54.14%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  Y R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N  E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAYERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQ 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROYA (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila yakuba GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.614e-13
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQ 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROSI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila simulans GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.614e-13
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQ 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROSE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila sechellia GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.614e-13
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQ 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROME (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila melanogaster GN=eIF3-S5-1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.614e-13
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQ 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROER (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila erecta GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.614e-13
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVE 485
            V VHP+VL  +V  + R   D+  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQ 136
[Close]
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.634e-12
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 3 
Query:   69 SRPIEKVLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKL 362
            SR +  V VHP+ L SI+ +Y R   D + RV+G LLG+  +  +++ + +AVP  ED ++  +  +D  YH SMY + +++   E +VGWY+T P+L
Sbjct:   26 SRSVTGVHVHPVALFSILDHYLR-RNDGQHRVIGTLLGTRTESEIEIKNCFAVPHLEDAEEGQVQ-VDMEYHRSMYELCQKVRPDEVIVGWYATSPEL 121
The following BLAST results are available for this feature:
BLAST of DY260562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
EI3F1_DROVI1.477e-1333.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CULQU2.520e-1333.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROGR3.291e-1332.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN3.291e-1333.08Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROYA5.614e-1332.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROSI5.614e-1332.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROSE5.614e-1332.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROME5.614e-1332.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROER5.614e-1332.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_USTMA1.634e-1237.76Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YO13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260562 ID=DY260562; Name=DY260562; organism=Citrus clementina; type=EST; length=1234bp
GAGAGCCAAAGTCCCTACCAACACCGAGAGATTCCAATATGGACGTGATA
AAGACCCCGCCAATTTCCTCGAGACCCATAGAGAAGGTCCTAGTTCACCC
GCTCGTCCTACTAAGCATCGTCCACAATTACCACCGCGTCCCCCAGGACA
CGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCTCCTTCAAAGGCACC
GTCGATGTCTCCCACAGCTACGCAGTGCCTTTTGAGGAAGATGACAAAGA
CCCAGGAATATGGTTTCTCGACCACAACTACCATGAATCAATGTATTCAA
TGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAGGTTGGTACAGTACA
GGACCCAAGCTACGAGAGAATGATCTTGACATTCACCAATTATTTCACAA
CTATGTCCCAAATCCTGTATTGGTCATTATTGATGTCCAACCAAAGGAGC
TTGGAATACCCACCAAGGCTTACTATGATGTTGAGGAGGTTAAAGAGAAT
GCCACCCCGAAAAAGCCAAAGGTCCTTGTACCCGTGCCCCTCCGAACTCG
CCCGCTCCTGAAGTCCAAACAACCCGGAGTGGAGCCCTTGGCCTAGGGAC
GCCACAGACCCCCCCCTCCAGCACCCTTGGCATTGACGGTCCATCACATC
CTTGTCCCTCTTGACCTAATCTATCTTTCACCTCGGCCCGCTGCCTTCCC
ACGTCGCGTTGCGGCCCCCCCCCTCCCTTCCCCTCCCTCTCCCTCCCCCG
CGACCGCCCCCGCCTCCCCCCCAACTCGCCGGCCAACACACCGTTCATCG
CATCCCTCCGCCCCAAGGCCACTCCCCCAACTCCCCCCCCCCTCACCCAC
CCACGACCTCCCTCCTCCCCCCCCCCCTCGCCCCGCCCTCCGCAGCCCCG
CACCCCCAGCACCACCAATCCCACTTACTCGCCCAACCCGACTTTCACCC
TCCCCACCCCACGCCGCTACTCACCACTGACACTGACCACACGCCTCGTG
TTCCTCCACCTTAACCTCCTTTCTGTCTACTGTCCCGCCCGCCCCCCTGC
CCGTCTGCTCCCATCCACCTACTGCCGCACCCCCGGCCACCCCTGTCTTC
CGCTCCCCCTCCCTGGCACGTCCTCCGTTCCACTCCCCTCTCTCTCATCC
ATACACCCCCCCCACCCCCCCTGACCTCCTACCTCACTCCCTCGTGCCTC
TCCTCCTCTTACTGCCCTTACTTCTTGCCCCTCC
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