DY260562

Overview
NameDY260562
Unique NameDY260562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.133e-12
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID 434
            V VHP+VL  IV  Y R   D+  RV+G L G+S KG V+V++ + VP +E          + NY   +Y + +R+N+ E +VGW++TG ++  +   IH+ +      PV V +D
Sbjct:    7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLWGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLD 118          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.639e-12
Identity = 40/116 (34.48%), Postives = 66/116 (56.90%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID 434
            V VHP+VL  +V  + R   ++  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D
Sbjct:    8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVD 119          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.639e-12
Identity = 40/116 (34.48%), Postives = 66/116 (56.90%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID 434
            V VHP+VL  +V  + R   ++  RV+G LLGS  KG V+V++ + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D
Sbjct:    8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVD 119          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.255e-11
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 3
Query:   69 SRPIEKVLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLREN 371
            SR I  V VHP+ L SI+ +Y R    ++ RV+G LLG+  +  V+V +++AVP  E  +DP    LD  +H  M  +  R+   E V+GWYST  +L  N
Sbjct:   27 SRSITAVKVHPVALFSILDHYLR-RDVSQPRVIGTLLGTRSESEVEVRNAFAVPHGES-QDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSN 125          
The following BLAST results are available for this feature:
BLAST of DY260562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
EIF3F_BOMMO2.133e-1235.34Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPS3.639e-1234.48Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPE3.639e-1234.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MALGO5.255e-1139.60Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YO13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260562 ID=DY260562; Name=DY260562; organism=Citrus clementina; type=EST; length=1234bp
GAGAGCCAAAGTCCCTACCAACACCGAGAGATTCCAATATGGACGTGATA
AAGACCCCGCCAATTTCCTCGAGACCCATAGAGAAGGTCCTAGTTCACCC
GCTCGTCCTACTAAGCATCGTCCACAATTACCACCGCGTCCCCCAGGACA
CGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCTCCTTCAAAGGCACC
GTCGATGTCTCCCACAGCTACGCAGTGCCTTTTGAGGAAGATGACAAAGA
CCCAGGAATATGGTTTCTCGACCACAACTACCATGAATCAATGTATTCAA
TGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAGGTTGGTACAGTACA
GGACCCAAGCTACGAGAGAATGATCTTGACATTCACCAATTATTTCACAA
CTATGTCCCAAATCCTGTATTGGTCATTATTGATGTCCAACCAAAGGAGC
TTGGAATACCCACCAAGGCTTACTATGATGTTGAGGAGGTTAAAGAGAAT
GCCACCCCGAAAAAGCCAAAGGTCCTTGTACCCGTGCCCCTCCGAACTCG
CCCGCTCCTGAAGTCCAAACAACCCGGAGTGGAGCCCTTGGCCTAGGGAC
GCCACAGACCCCCCCCTCCAGCACCCTTGGCATTGACGGTCCATCACATC
CTTGTCCCTCTTGACCTAATCTATCTTTCACCTCGGCCCGCTGCCTTCCC
ACGTCGCGTTGCGGCCCCCCCCCTCCCTTCCCCTCCCTCTCCCTCCCCCG
CGACCGCCCCCGCCTCCCCCCCAACTCGCCGGCCAACACACCGTTCATCG
CATCCCTCCGCCCCAAGGCCACTCCCCCAACTCCCCCCCCCCTCACCCAC
CCACGACCTCCCTCCTCCCCCCCCCCCTCGCCCCGCCCTCCGCAGCCCCG
CACCCCCAGCACCACCAATCCCACTTACTCGCCCAACCCGACTTTCACCC
TCCCCACCCCACGCCGCTACTCACCACTGACACTGACCACACGCCTCGTG
TTCCTCCACCTTAACCTCCTTTCTGTCTACTGTCCCGCCCGCCCCCCTGC
CCGTCTGCTCCCATCCACCTACTGCCGCACCCCCGGCCACCCCTGTCTTC
CGCTCCCCCTCCCTGGCACGTCCTCCGTTCCACTCCCCTCTCTCTCATCC
ATACACCCCCCCCACCCCCCCTGACCTCCTACCTCACTCCCTCGTGCCTC
TCCTCCTCTTACTGCCCTTACTTCTTGCCCCTCC
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