DY260570

Overview
NameDY260570
Unique NameDY260570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.037e-27
Identity = 76/205 (37.07%), Postives = 116/205 (56.59%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + +GYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  587 FAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 774          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.050e-26
Identity = 69/204 (33.82%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M +GYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   ++WN+ +G+
Sbjct:  425 FAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 611          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.050e-26
Identity = 58/136 (42.65%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   APS +F+DE+DS+  +R    EHEA R++K+E ++  DG+       +  + V+VLAATN P+D+DEA+ RRL +R+ + LP+   RE+++R+ L +  LA D+DL+ IA   DGYSG+D+ N+C  A+
Sbjct:  319 FEMARFYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDAS 454          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.050e-26
Identity = 76/210 (36.19%), Postives = 113/210 (53.81%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVR--PLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 606
            F LA   APS +F+DE+DS+   R   GEHE+ R++K+E +V  DG+          ++ V+VLAATN P+D+DEA+ RRL +R+ + LPD  +R+ +I + L   E+ASDV++E +A   +GYSG DL N+C  A+                      R      S  D+   P+ M DF+ A  +V  SVSS     +E  +W   +G
Sbjct:  324 FDLARAYAPSTIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDAS----------MNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHE--KWLSEFG 521          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.371e-26
Identity = 76/205 (37.07%), Postives = 116/205 (56.59%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R + GEHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D L  ++ + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S ++ E  +W+  YG+
Sbjct:  598 FAVARHLQPSIIFIDEVDSLLSERSS-GEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAPQSLSLYE--KWSSDYGD 785          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.371e-26
Identity = 77/207 (37.20%), Postives = 118/207 (57.00%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA---DGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +R++VLAATNRP +LDEA +RR  +R+ V+LP+   RE ++  +L K+   S +D E +A +A   DGYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  575 FAVARHLQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 762          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.371e-26
Identity = 59/132 (44.70%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F LA   APS++F+DE+D++ G+R N GEHEA R++K+EF+V  DG + K D  RV VLAATN P++LDEA+ RR  +R+ + LPD   R+K+I   +     + +++ + +A   +G+SG+D+ +LC TAA
Sbjct:  278 FELARFYAPSIIFIDEIDTLGGQRGNSGEHEASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAA 409          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.790e-26
Identity = 76/205 (37.07%), Postives = 115/205 (56.10%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  568 FAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.790e-26
Identity = 76/205 (37.07%), Postives = 115/205 (56.10%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  568 FAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.790e-26
Identity = 64/133 (48.12%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAA 393
            F++A  + PS++F+DEVDS+L  R + GEHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D L  ++ + DGYSGSDL  L   AA
Sbjct:  598 FAVARHLQPSIIFIDEVDSLLSERSS-GEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAA 729          
The following BLAST results are available for this feature:
BLAST of DY260570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
SPAST_DROWI8.037e-2737.07Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_BOVIN1.050e-2633.82Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
KTNA1_STRPU1.050e-2642.65Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
KTNA1_ARATH1.050e-2636.19Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
SPAST_DROPE1.371e-2637.07Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
SPAST_DROMO1.371e-2637.20Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
MEI1_CAEEL1.371e-2644.70Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
SPAST_DROYA1.790e-2637.07Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE1.790e-2637.07Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROPS1.790e-2648.12Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260570 ID=DY260570; Name=DY260570; organism=Citrus clementina; type=EST; length=949bp
TTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGAGGT
TGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTATGC
GTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACAAAG
GATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCT
TGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGC
CAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAA
GAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGG
GTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTC
CCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTG
GCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCC
TCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTG
TATCATCAGAGTCTACAAATATGAATGAGCTCCTTCAATGGAATGAACTA
TATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTA
GAGGTGGTATCTCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTA
TCATCCTAAATGATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCT
GTTGGGCTGTCCCTTTTTCCTTGTAATAAATAAAGGTTTTGGGAAGCTTT
AACCCTTTTGGTAAGAATTTCTTTTTTATATTCCTCAAACCAGGGTAAAC
TAAAACCAAAAGGGGTTTTTTTCCTTCCTTTAAAGCCGAATCTTTTCTCT
CCCGGACCATACCAAATTGGTTTAATCCAATTTTGAATTAAATTTTTGG
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