DY260570

Overview
NameDY260570
Unique NameDY260570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.790e-26
Identity = 76/205 (37.07%), Postives = 115/205 (56.10%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  568 FAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.790e-26
Identity = 76/205 (37.07%), Postives = 115/205 (56.10%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  568 FAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.790e-26
Identity = 61/136 (44.85%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  295 FEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDAS 430          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.338e-26
Identity = 61/136 (44.85%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+
Sbjct:  291 FEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS 426          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.338e-26
Identity = 74/207 (35.75%), Postives = 118/207 (57.00%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKE----RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 606
            F +A   AP+ +F+DE+DSM  RR    EHEA R++K E +V  DG+    D E     V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++R+ L + ELA+DVD+  IA  ++GYSG+D+ N+C  A+                     N +   ++      P  M+DF+ + ++V  SVS  ++++ +  +W E +G
Sbjct:  289 FEMARFYAPTTIFIDEIDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDAS----LMAMRRRIEGLTPEEIRNISRAEMH-----MPTTMEDFESSLKKVSKSVS--ASDLEKYEKWIEEFG 484          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.054e-26
Identity = 76/205 (37.07%), Postives = 115/205 (56.10%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEG-IANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D  G +A + +GYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  592 FAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRQITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 779          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.989e-26
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 402
            F+LA K+ P+++F+DE+D+ L +R+   +HEAM ++K EFM  WDGL +  + RVLVL ATNRP D+DEA+ RR+P+   + LP+A  R KI+ + L K  L ++ D  G+ N   G SGS +K +C +A   P
Sbjct:  177 FTLARKLEPTIIFIDEIDTFLRQRQRT-DHEAMAQIKAEFMSMWDGLLS-GQSRVLVLGATNRPADIDEAIRRRMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVP 308          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.989e-26
Identity = 77/207 (37.20%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA---DGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +R++VLAATNRP +LDEA +RR  +R+ V+LP    RE ++  +L K+   S +D E +A +A   DGYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  579 FAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPGVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 766          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.989e-26
Identity = 76/205 (37.07%), Postives = 114/205 (55.61%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A   DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  580 FAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITESDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 767          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.989e-26
Identity = 60/136 (44.12%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   +P+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  294 FEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
The following BLAST results are available for this feature:
BLAST of DY260570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
SPAST_DROME1.790e-2637.07Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER1.790e-2637.07Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
KTNA1_CHICK1.790e-2644.85Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KTNA1_XENLA2.338e-2644.85Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_SALSA2.338e-2635.75Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
SPAST_DROGR3.054e-2637.07Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
YJNA_SCHPO3.989e-2644.78Uncharacterized AAA domain-containing protein C24B... [more]
SPAST_DROVI3.989e-2637.20Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_DROAN3.989e-2637.07Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
KTNA1_MACFA3.989e-2644.12Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260570 ID=DY260570; Name=DY260570; organism=Citrus clementina; type=EST; length=949bp
TTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGAGGT
TGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTATGC
GTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACAAAG
GATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCT
TGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGC
CAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAA
GAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGG
GTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTC
CCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTG
GCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCC
TCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTG
TATCATCAGAGTCTACAAATATGAATGAGCTCCTTCAATGGAATGAACTA
TATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTA
GAGGTGGTATCTCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTA
TCATCCTAAATGATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCT
GTTGGGCTGTCCCTTTTTCCTTGTAATAAATAAAGGTTTTGGGAAGCTTT
AACCCTTTTGGTAAGAATTTCTTTTTTATATTCCTCAAACCAGGGTAAAC
TAAAACCAAAAGGGGTTTTTTTCCTTCCTTTAAAGCCGAATCTTTTCTCT
CCCGGACCATACCAAATTGGTTTAATCCAATTTTGAATTAAATTTTTGG
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