DY260570

Overview
NameDY260570
Unique NameDY260570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.989e-26
Identity = 60/136 (44.12%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   +P+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  294 FEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.209e-26
Identity = 60/136 (44.12%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   +P+ +F+DE+DS+  RR    EHEA R+MK E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+
Sbjct:  294 FEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDAS 429          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.804e-26
Identity = 69/207 (33.33%), Postives = 115/207 (55.56%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----RTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 606
            F +A   AP+ +F+DE+DS+ GRR    EHEA R++K+E +V  DG+     ++D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + ++ASDVDL   A   +GYSG+D+ N+C  A+                     +             P+ M+DF+ A +++  SVS  + ++ +   W   +G
Sbjct:  291 FEMARFYAPTTIFIDEIDSICGRRGTSDEHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRALSKDELQ---------MPVTMEDFELALKKISKSVS--AADLEKYESWMSEFG 486          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.886e-26
Identity = 66/204 (32.35%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            FS+A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LD+AV+RR  +R+ V+LP+   R  +++ +L+K+    ++ +L  ++ + +GYSGSD+  L   AA  P                          ++ ++R +K  DF  + +++  SVS   + +   ++WN+ +G+
Sbjct:  414 FSVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKN--------------MAASEMRNIKYSDFLSSLKKIKCSVS--PSTLESYIRWNKEFGD 600          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.161e-25
Identity = 67/204 (32.84%), Postives = 120/204 (58.82%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            FS+A ++ PS++F+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RVLV+ ATNRP +LD+AV+RR  +R+ V LP+   R  +++ +L+K+    S+ +L  ++ + +GYSGSD+  L   AA  P                          ++ ++R +K  DF  + +++  SVS   + +   ++WN+ +G+
Sbjct:  411 FSVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKN--------------MAASEMRNMKYSDFLGSLKKIKCSVS--HSTLESYIRWNQDFGD 597          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.161e-25
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL--AKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 402
            FS+A    PSV+F+DE+DS+L  R    EHE+ R++K EF+V  DG+ T   ER+LVL ATNRP +LDEA  RR  +RL + LP+  +R +I+  +L   + E+ +D +LE I  + DGYSG+D++ LC  AA  P
Sbjct:  401 FSVARLKLPSVIFIDEIDSLLSARSE-SEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEI-TDHNLEKIRRLTDGYSGADMRQLCTEAAMGP 534          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.516e-25
Identity = 59/136 (43.38%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   +P+ +F+DE+DS+  RR    EHEA R++K E +V  DG+          + V+VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+
Sbjct:  294 FEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDAS 429          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.980e-25
Identity = 75/205 (36.59%), Postives = 114/205 (55.61%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 609
            F++A  + PS++F+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +R++VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL      AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  568 FAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTARPKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.585e-25
Identity = 59/136 (43.38%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  DV LE IA+  +GYSG+D+ N+C  A+
Sbjct:  291 FEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDAS 426          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.377e-25
Identity = 69/203 (33.99%), Postives = 110/203 (54.19%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR-VILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 606
            F++A+   PS++F+DE+DS+L  R +  E EA R++K E +V +DG RT   ERVLV+ ATNRP DLD+A +RRL +R+ V LP+   R +II+ +++ +    +   +  +A +  GYSG DL  LC  AA+ P                             ++  +   DF  + +Q+  SV+S+S    E  +WN+ +G
Sbjct:  469 FAVATHFQPSIIFIDEIDSLLTERSS-NESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQINSLAEVTQGYSGFDLAALCKDAAYEPIRRLGIGIKDLELN---------------EISLISFKDFANSLKQIRPSVTSQSLKSFE--KWNQKFG 653          
The following BLAST results are available for this feature:
BLAST of DY260570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
KTNA1_HUMAN3.989e-2644.12Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KTNA1_MOUSE5.209e-2644.12Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
KATL1_DANRE6.804e-2633.33Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SPAST_XENTR8.886e-2632.35Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_XENLA1.161e-2532.84Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
FIGL1_CAEBR1.161e-2546.32Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
KTNA1_RAT1.516e-2543.38Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
SPAST_DROSI1.980e-2536.59Spastin OS=Drosophila simulans GN=spas PE=3 SV=1[more]
KATL1_MOUSE2.585e-2543.38Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SPAST_DICDI3.377e-2533.99Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260570 ID=DY260570; Name=DY260570; organism=Citrus clementina; type=EST; length=949bp
TTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGAGGT
TGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTATGC
GTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACAAAG
GATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCT
TGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGC
CAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAA
GAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGG
GTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTC
CCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTG
GCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCC
TCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTG
TATCATCAGAGTCTACAAATATGAATGAGCTCCTTCAATGGAATGAACTA
TATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTA
GAGGTGGTATCTCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTA
TCATCCTAAATGATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCT
GTTGGGCTGTCCCTTTTTCCTTGTAATAAATAAAGGTTTTGGGAAGCTTT
AACCCTTTTGGTAAGAATTTCTTTTTTATATTCCTCAAACCAGGGTAAAC
TAAAACCAAAAGGGGTTTTTTTCCTTCCTTTAAAGCCGAATCTTTTCTCT
CCCGGACCATACCAAATTGGTTTAATCCAATTTTGAATTAAATTTTTGG
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