DY260570

Overview
NameDY260570
Unique NameDY260570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.410e-25
Identity = 58/136 (42.65%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  291 FEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDAS 426          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.410e-25
Identity = 60/135 (44.44%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR-VILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 402
            FS+A    PSV+F+DE+DS+L  R    EHE+ R++K EF+V  DG+ T   ER+LVL ATNRP +LDEA  RR  +RL + LP+  +R +I++ +++      ++ +LE I  + DGYSG+D++ LC  AA  P
Sbjct:  401 FSVARLKLPSVIFIDEIDSLLSSRSE-SEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIVQNLLVGTRHDITNHNLERIRELTDGYSGADMRQLCTEAAMGP 534          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.760e-25
Identity = 59/137 (43.07%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 402
            F +A    PS++F+DE+DS+L  R    + E  R+MK EF+V +DG  +   +R+LV+ ATNRP++LD+AV+RR P+R+M+NLPD   R+++I   L K ++    S  D+  IA+   G+S SDL  LC  AA  P
Sbjct:  354 FQIARNGQPSIIFIDEIDSILCERSEK-DAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLRRFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVP 489          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.522e-25
Identity = 62/132 (46.97%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLEGIANMADGYSGSDLKNLCVTAA 393
            FSLA+K+ P ++F+DE+DS L  R +  +HE    +K EFM  WDGL      RV+++ ATNR  D+D+A +RRLP+R +V+LP +  R KI+ V+L   +L  D  DL+ IA+   G+SGSDLK LC  AA
Sbjct:  178 FSLANKLQPCIIFIDEIDSFLRERSST-DHEVTATLKAEFMTLWDGLLNNG--RVMIIGATNRINDIDDAFLRRLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAA 306          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.522e-25
Identity = 59/136 (43.38%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E +V  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  293 FEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.522e-25
Identity = 58/136 (42.65%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  293 FEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.522e-25
Identity = 58/136 (42.65%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  293 FEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.522e-25
Identity = 58/136 (42.65%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  293 FEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.283e-24
Identity = 58/136 (42.65%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG----LRTKDKER-VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K+E ++  DG    L   D  + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  293 FEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.676e-24
Identity = 56/135 (41.48%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F +A   AP+ +F+DE+DS+  RR    EHEA R++K E +V  DG+         + V+VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + +LA+DV+++ IA   +GYSG+D+ N+C  A+
Sbjct:  289 FEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDAS 423          
The following BLAST results are available for this feature:
BLAST of DY260570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
KATL1_RAT4.410e-2542.65Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
FIGL1_CAEEL4.410e-2544.44Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
SPAST_CAEBR5.760e-2543.07Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
MSP1_YEAST7.522e-2546.97Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
KATL1_RABIT7.522e-2543.38Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN7.522e-2542.65Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA7.522e-2542.65Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN7.522e-2542.65Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_SORAR1.283e-2442.65Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KTNA1_DANRE1.676e-2441.48Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260570 ID=DY260570; Name=DY260570; organism=Citrus clementina; type=EST; length=949bp
TTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGAGGT
TGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTATGC
GTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACAAAG
GATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCT
TGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGC
CAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAA
GAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGG
GTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTC
CCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTG
GCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCC
TCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTG
TATCATCAGAGTCTACAAATATGAATGAGCTCCTTCAATGGAATGAACTA
TATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTA
GAGGTGGTATCTCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTA
TCATCCTAAATGATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCT
GTTGGGCTGTCCCTTTTTCCTTGTAATAAATAAAGGTTTTGGGAAGCTTT
AACCCTTTTGGTAAGAATTTCTTTTTTATATTCCTCAAACCAGGGTAAAC
TAAAACCAAAAGGGGTTTTTTTCCTTCCTTTAAAGCCGAATCTTTTCTCT
CCCGGACCATACCAAATTGGTTTAATCCAATTTTGAATTAAATTTTTGG
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