DY260570

Overview
NameDY260570
Unique NameDY260570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.189e-24
Identity = 68/205 (33.17%), Postives = 109/205 (53.17%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV---DLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 606
            F +A    PS++F+DE+DS+L  R    + E  R+MK EF+V +DG  +   +R+LV+ ATNRP +LD+AV+RR P+R+M+NLPD   R+++I   L K  +   +   D+  IA+   G+S SDL  LC  AA  P                  +R+   +     +R ++  DF  A   +  S S +   M++L  ++  +G
Sbjct:  324 FQIARNAQPSIIFIDEIDSILCERSEK-DAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVP--------------IREIDRSKLSMTDGEKIRKIRASDFDTALRTIRPSTSQKI--MSKLSDFSRSFG 511          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.858e-24
Identity = 72/215 (33.49%), Postives = 115/215 (53.49%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD-VRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 615
            F+LA K++PS++FVDE+DS+L  R + G EHE  R++K EF++ W  L       +T D  RVLVLAATN P+ +D+A  RR  RR  + LPD   R   +  +L  ++ +  + D+E I    + YSGSDL  L   AA  P                  +     L++ ++ +RP+ +DDFK + + +  SV+ +   +    +W++ +G  G
Sbjct:  544 FTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMGP----------------LRSLGESLLFTKMESIRPINLDDFKTSIKVIRPSVNLQ--GLERYSEWDKEFGSQG 740          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.876e-24
Identity = 55/127 (43.31%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 381
            FS+A K  P+++F+DE+DS L  R++  +HE+   MK +FM  WDG  +   ++++V+ ATNRP D+D A++RR+  R  V +P+A  R +I+ VIL  E++ + V+L  IA  A+G SGSDLK +C
Sbjct:  169 FSVAQKFQPTIIFIDEIDSFLRDRQSH-DHESTAMMKAQFMTLWDGFSSSG-DQIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVC 293          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.419e-23
Identity = 70/225 (31.11%), Postives = 111/225 (49.33%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------------------KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA-KEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 618
            F++A K++PS++FVDE+DS++G R N  E+E+ R++KNEF+V W  L +                  +D  RVLVLAATN P+ +DEA  RR  RR  + LP+   R    + +L+ ++   ++ D + +  + +GYSGSD+ +L   AA  P                              +RP+ + DFK +   +  SVS +     E  +W   +G  GS
Sbjct:  690 FAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARRRFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGSDITSLAKDAAMGPLRDLGDKLLETEREM---------------IRPIGLVDFKNSLVYIKPSVSQDGLVKYE--KWASQFGSSGS 897          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.420e-23
Identity = 73/218 (33.49%), Postives = 120/218 (55.05%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDKE-----RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD-VRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 618
            F +A K++PS++F+DE+DSML  R +  E+E+ R++K E ++ W  L     +++D+      RVLVL ATN P+ +D+A  RR  R+L + LPD   R   ++ ++AK++ +  D+D E I  M +G+SGSDL +L   AA  P                  +     +++  D +R +++ DF+ A   +  SVSSES    E  +W+  +G  GS
Sbjct:  556 FYMAKKLSPSIIFIDEIDSMLTARSD-NENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEP----------------IRDLGDKLMFADFDKIRGIEIKDFQNALLTIKKSVSSESLQKYE--EWSSKFGSNGS 754          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.420e-23
Identity = 64/188 (34.04%), Postives = 105/188 (55.85%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL---EGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 555
            F +A    P+++F+DE+DS+L  R N  E E  R+MK EF++  DG+ +   +R+LV+ ATNRP +LD A++RR P+R+++++P+A  R K+I  +L K + + D+ L   + +A    GYS SDL  LC  AA  P                  +R       S ++RP+ + DF+ A + +  S +
Sbjct:  264 FQIARNGQPTIIFIDEIDSILCER-NEKETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILRRFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVP--------------IRDLSRKDIKNLVSTELRPITLRDFEIAMKAIKPSTN 436          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SPAST_NEMVE (Spastin OS=Nematostella vectensis GN=v1g144095 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.391e-23
Identity = 70/201 (34.83%), Postives = 108/201 (53.73%), Query Frame = 1
Query:    7 LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-EELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 606
            LAS +  S+  +DEVDS+L  R   GEHE  R++K EF+V++DG+    +ER+LV+ ATNRP +LD+A +RR+ +R+ + LPD   R+ ++  +LAK     S  +++ +A M + YSGSDL  L   AA  P                  N       ++ +VR +   DF  + + +  SV  E+    +   WN LYG
Sbjct:  411 LASILTTSLFTIDEVDSLLTERRE-GEHEHSRRLKTEFLVSFDGVVADPEERILVMGATNRPQELDDAALRRMVKRIHIPLPDKETRKVLLTKLLAKHHNPLSGAEIDRLARMTEHYSGSDLTALARDAALGP--------------IRDLNSDQLKSMAANEVRNITFQDFVNSLQIIRPSVGPETLKAYD--DWNRLYG 594          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.568e-22
Identity = 72/212 (33.96%), Postives = 110/212 (51.89%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD-VRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 606
            F +A +   SV+FVDE+DS+L  R + G EHE+ R++K EF++ W  L       +T    RVLVLAATN P+ +DEA  RR  +R  + LP+   R K +  +L  +    ++ DLE + N+ +GYSGSD+  L   AA  P                  N     L +S + + P+ ++ FK +   +  SVS E  +  E  +WN+ +G
Sbjct:  464 FEVAKRQTCSVIFVDEIDSILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARRRFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGP----------------LRNLGDALLTTSAEMIPPISLNHFKASLRTIRPSVSQEGIHRYE--EWNKQFG 657          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.124e-20
Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL------AKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 402
            F LA   APS +F+DE++S++ +R     GEHE  R+MK E +V  DGL   D + V VLAA+N P++LD A++RRL +R++V+LP    R+ +I+  L      +  EL +D+D   +    DGYSGSD++ +C  AA  P
Sbjct:  343 FELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSD-DLVFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRP 483          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.623e-19
Identity = 54/125 (43.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELASDVDLEGIANMADGYSGSDL 369
            F +A +  PS++F+DE+DS+ G R   GE E+ R++K EF+V  +G+  KD+  VLVL ATN P+ LD A+ RR  +R+ + LP+A  R ++  + + K   EL S  D + +A M DGYSGSD+
Sbjct:  214 FEMAREQKPSIIFIDEIDSLCGSRSE-GESESSRRIKTEFLVQMNGVG-KDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQ-DFKELAKMTDGYSGSDI 335          
The following BLAST results are available for this feature:
BLAST of DY260570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
SPAST_CAEEL2.189e-2433.17Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
YKX4_SCHPO2.858e-2433.49Uncharacterized AAA domain-containing protein C328... [more]
MSP1_CAEEL4.876e-2443.31Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
SAP1_YEAST1.419e-2331.11Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
TBP6_YEAST2.420e-2333.49Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SPAST_BRUMA2.420e-2334.04Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
SPAST_NEMVE5.391e-2334.83Spastin OS=Nematostella vectensis GN=v1g144095 PE=... [more]
SUR2_SCHPO1.568e-2233.96Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
KATL2_XENTR1.124e-2041.55Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4_SCHPO1.623e-1943.20Suppressor protein of bem1/bed5 double mutants OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260570 ID=DY260570; Name=DY260570; organism=Citrus clementina; type=EST; length=949bp
TTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGAGGT
TGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTATGC
GTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACAAAG
GATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCT
TGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGC
CAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAA
GAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGG
GTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTC
CCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTG
GCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCC
TCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTG
TATCATCAGAGTCTACAAATATGAATGAGCTCCTTCAATGGAATGAACTA
TATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTA
GAGGTGGTATCTCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTA
TCATCCTAAATGATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCT
GTTGGGCTGTCCCTTTTTCCTTGTAATAAATAAAGGTTTTGGGAAGCTTT
AACCCTTTTGGTAAGAATTTCTTTTTTATATTCCTCAAACCAGGGTAAAC
TAAAACCAAAAGGGGTTTTTTTCCTTCCTTTAAAGCCGAATCTTTTCTCT
CCCGGACCATACCAAATTGGTTTAATCCAATTTTGAATTAAATTTTTGG
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