DY260570

Overview
NameDY260570
Unique NameDY260570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 3.061e-18
Identity = 55/142 (38.73%), Postives = 88/142 (61.97%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 402
            F LA   APS +F+DE++S++ +R   + GEHE   +MK E +V  DGL  + ++ V VLAA+N P++LD A++RRL +R++V+LP    R+ +I   L         EL ++++   ++   +GYSGSD+K +C  AA  P
Sbjct:  339 FELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRP 479          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.998e-18
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            FS A K +P ++F+DE+D++ G R NP + + M+   N+ +V  DG   K  E ++V+AATN P  LD+A+VR  R  R ++V  PD   R +I+   ++K   A DVDL  IA    G+SG+DL NL   AA
Sbjct:  312 FSAAKKCSPCIIFIDEIDAIGGSR-NPKDQQYMKMTLNQMLVELDGF--KQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAA 441          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.998e-18
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A ++AP+V+F DE+DS+   R   G +    ++ N+ +   DGL  ++ E V+V+AATNRP  +D A++R  R  R + V  P    RE+I+++      LA+DV L  +A  ADGY GSDL N+   AA
Sbjct:  548 FRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGL--EEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAA 678          

HSP 2 Score: 73.1738 bits (178), Expect = 2.510e-12
Identity = 60/205 (29.27%), Postives = 103/205 (50.24%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 606
            F  A   +PS++F+DE+DS+  +RE+  GE E  R++  + +   DGL  + + +V+V+AATNR   +D A+ R  R  R + + +PD   RE+I+++      L+ DV+L  +A+   G+ G+D+++L   AA                         PP  S +D   +K +DFK A  +V  S   E       + W+++ G
Sbjct:  275 FEDAKDDSPSIIFIDELDSIAPKREDVTGEVE--RRVVAQLLTMMDGL--EGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAA-------MRALRRYLPEIDLDEEDIPP--SLIDRMIVKREDFKGALSEVEPSAMREVLVELPKITWDDVGG 466          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.221e-18
Identity = 54/136 (39.71%), Postives = 83/136 (61.03%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA+D+D   IA    G+SG+DL NL   AA
Sbjct:  237 FEQAKKAAPCIIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAA 369          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.221e-18
Identity = 54/136 (39.71%), Postives = 83/136 (61.03%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA+D+D   IA    G+SG+DL NL   AA
Sbjct:  237 FEQAKKAAPCIIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAA 369          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.819e-18
Identity = 56/136 (41.18%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG    D   V+V+AATNRP  LD A+ R  R  R+++V LPD   RE+I++V + K  +A DVD   +A    GYSG+DL NL   AA
Sbjct:  236 FEQAKKNAPCLIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDG--VIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAA 368          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.819e-18
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K +P+++F+DE+DS+  +RE     E  R++ ++ +   DG+  K +  V+V+AATNRP  +D A+ R  R  R + V +PD   R +I+R+     +LA DVDLE IA    GY GSDL +LC  AA
Sbjct:  310 FEEAEKNSPAIIFIDEIDSIAPKREKTNG-EVERRVVSQLLTLMDGM--KARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAA 439          

HSP 2 Score: 77.0258 bits (188), Expect = 1.738e-13
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSML-GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 372
            F  A   AP VVF+DE+DS+   R  + G+     ++ N+ +   DG+ +K  + V V+ ATNRP  +D A++R  RL + + V LPD   R  I++  L    +A DVDL  +A    G+SG+DL+
Sbjct:  583 FDKARAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSK--KNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLE 707          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.819e-18
Identity = 46/134 (34.33%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 396
            F  A   +P ++F DE+DS+   R +   ++A  ++ N+ +   DG+   +K+ + ++AATNRP  LD+A+ R  RL + + ++LPD  +R  I + IL    L  DVD+  +A   +G+SG+D+ NLC +A +
Sbjct: 1020 FDKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGIN--EKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKRTEGFSGADITNLCQSAVN 1151          

HSP 2 Score: 82.8037 bits (203), Expect = 3.168e-15
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  AS+  P ++F+DE+DS+  +R     +E  +++ ++ +   DGL  K    VLVLAATNRP  +D A+ R  R  R + + +PD   R +I+     K +L  DV+L  IA    GY G+DL  LC  AA
Sbjct:  613 FKKASEKTPCIIFIDEIDSIANKRSK-SNNELEKRVVSQLLTLMDGL--KKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKECHGYVGADLAQLCFEAA 742          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.906e-18
Identity = 54/136 (39.71%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA D+D   IA    G+SG+DL NL   AA
Sbjct:  237 FEQAKKAAPCIIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 369          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.906e-18
Identity = 54/136 (39.71%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA D+D   IA    G+SG+DL NL   AA
Sbjct:  237 FEQAKKAAPCIIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 369          
The following BLAST results are available for this feature:
BLAST of DY260570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
KATL2_HUMAN3.061e-1838.73Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
FTSH4_ARATH3.998e-1841.35Cell division protease ftsH homolog 4, mitochondri... [more]
CDCH_HALSA3.998e-1839.10Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
FTSH_SALTY5.221e-1839.71Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI5.221e-1839.71Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH1_HAEIN6.819e-1841.18Cell division protease ftsH homolog 1 OS=Haemophil... [more]
CDC48_SCHPO6.819e-1840.60Cell division cycle protein 48 OS=Schizosaccharomy... [more]
CDAT_PLAF76.819e-1834.33Putative cell division cycle ATPase OS=Plasmodium ... [more]
FTSH_SHIFL8.906e-1839.71Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI8.906e-1839.71Cell division protease ftsH OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260570 ID=DY260570; Name=DY260570; organism=Citrus clementina; type=EST; length=949bp
TTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGAGGT
TGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTATGC
GTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACAAAG
GATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCT
TGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGC
CAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAA
GAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGG
GTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTC
CCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTG
GCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCC
TCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTG
TATCATCAGAGTCTACAAATATGAATGAGCTCCTTCAATGGAATGAACTA
TATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTA
GAGGTGGTATCTCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTA
TCATCCTAAATGATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCT
GTTGGGCTGTCCCTTTTTCCTTGTAATAAATAAAGGTTTTGGGAAGCTTT
AACCCTTTTGGTAAGAATTTCTTTTTTATATTCCTCAAACCAGGGTAAAC
TAAAACCAAAAGGGGTTTTTTTCCTTCCTTTAAAGCCGAATCTTTTCTCT
CCCGGACCATACCAAATTGGTTTAATCCAATTTTGAATTAAATTTTTGG
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