DY260570

Overview
NameDY260570
Unique NameDY260570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.906e-18
Identity = 54/136 (39.71%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP ++F+DE+D++ GR+   G    H+   +  N+ +V  DG   +  E ++V+AATNRP  LD A++R  R  R+++V LPD   RE+I++V + +  LA D+D   IA    G+SG+DL NL   AA
Sbjct:  237 FEQAKKAAPCIIFIDEIDAV-GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 369          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP+++F+DE+D++  +RE     E  R++ ++ +   DGL  K +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA
Sbjct:  290 FEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419          

HSP 2 Score: 85.5001 bits (210), Expect = 4.887e-16
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSML-GRRENPGEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+   R  N G+   A  ++ N+ +   DG+ TK  + V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A
Sbjct:  563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP+++F+DE+D++  +RE     E  R++ ++ +   DGL  K +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA
Sbjct:  290 FEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419          

HSP 2 Score: 85.5001 bits (210), Expect = 4.887e-16
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSML-GRRENPGEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+   R  N G+   A  ++ N+ +   DG+ TK  + V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A
Sbjct:  563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP+++F+DE+D++  +RE     E  R++ ++ +   DGL  K +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA
Sbjct:  290 FEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419          

HSP 2 Score: 85.5001 bits (210), Expect = 4.887e-16
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSML-GRRENPGEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+   R  N G+   A  ++ N+ +   DG+ TK  + V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A
Sbjct:  563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP+++F+DE+D++  +RE     E  R++ ++ +   DGL  K +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA
Sbjct:  290 FEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419          

HSP 2 Score: 85.5001 bits (210), Expect = 4.887e-16
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSML-GRRENPGEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+   R  N G+   A  ++ N+ +   DG+ TK  + V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A
Sbjct:  563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP+++F+DE+D++  +RE     E  R++ ++ +   DGL  K +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA
Sbjct:  290 FEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419          

HSP 2 Score: 82.0333 bits (201), Expect = 5.403e-15
Identity = 49/134 (36.57%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSML-GRRENPGEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+   R  N G+   A  ++ N+ +   DG+ +K  + V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  ++ DVDL+ +A M +G+SG+DL  +C  A
Sbjct:  563 FDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDVDLDFLAKMTNGFSGADLTEICQRA 694          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP+++F+DE+D++  +RE     E  R++ ++ +   DGL  K +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+++     +LA DVDLE +AN   G+ G+DL  LC  AA
Sbjct:  290 FEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419          

HSP 2 Score: 85.5001 bits (210), Expect = 4.887e-16
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSML-GRRENPGEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+   R  N G+   A  ++ N+ +   DG+ TK  + V ++ ATNRP  +D A++R  RL + + + LPD  +R  I++  L K  +A DVDLE +A M +G+SG+DL  +C  A
Sbjct:  563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K APS++F+DE+D++ GR+   G    ++   +  N+ +V  DG +  D   V+V+AATNR   LD A++R  R  R+++V  PD   RE +++V    + LASDVDL  +A    GY G+DL+N+   AA
Sbjct:  278 FENAKKTAPSIIFIDEIDAV-GRQRGAGLGGGNDEREQTLNQLLVEMDGFQD-DGNSVIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPLASDVDLHNVATQTPGYVGADLENVLNEAA 411          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 50/133 (37.59%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP+++F+DE+DS+  +R+     E  R++ ++ +   DG+  K +  V+V+AATNRP  +D A+ R  R  R + + +PDA  R +++R+     +LA DVDLE +A    GY G+D+ +LC  AA
Sbjct:  300 FEEAEKNAPAIIFIDEIDSIAPKRDKTNG-EVERRVVSQLLTLMDGM--KARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEALAAETHGYVGADIASLCSEAA 429          

HSP 2 Score: 70.8626 bits (172), Expect = 1.246e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A   AP+VVF+DE+DS+   R         A  ++ N+ +   DG+  K  + V V+ ATNRP  +D A++R  RL + + V LPD   R  I+   L K  L   ++L  IA    G+SG+DL  +   AA
Sbjct:  573 FDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAK--KNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSGADLLYIVQRAA 705          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.519e-17
Identity = 55/142 (38.73%), Postives = 86/142 (60.56%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 402
            F LA   APS +F+DE++S++ +R     GEHE   +MK E +V  DGL  + ++ V VLAA+N P++LD A++RRL +R++V+LP    R+ +I   L         EL + ++   ++   +GYSGSD+K +C  AA  P
Sbjct:  340 FELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRP 480          
The following BLAST results are available for this feature:
BLAST of DY260570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
FTSH_ECO578.906e-1839.71Cell division protease ftsH OS=Escherichia coli O1... [more]
TERA_RAT1.163e-1739.10Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG1.163e-1739.10Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE1.163e-1739.10Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN1.163e-1739.10Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_DANRE1.163e-1739.10Transitional endoplasmic reticulum ATPase OS=Danio... [more]
TERA_BOVIN1.163e-1739.10Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
FTSH_LACLA1.163e-1738.97Cell division protease ftsH homolog OS=Lactococcus... [more]
CDC48_YEAST1.163e-1737.59Cell division control protein 48 OS=Saccharomyces ... [more]
KATL2_MOUSE1.519e-1738.73Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260570 ID=DY260570; Name=DY260570; organism=Citrus clementina; type=EST; length=949bp
TTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGAGGT
TGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTATGC
GTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACAAAG
GATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCT
TGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGC
CAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAA
GAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGG
GTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTC
CCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTG
GCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCC
TCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTG
TATCATCAGAGTCTACAAATATGAATGAGCTCCTTCAATGGAATGAACTA
TATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTA
GAGGTGGTATCTCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTA
TCATCCTAAATGATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCT
GTTGGGCTGTCCCTTTTTCCTTGTAATAAATAAAGGTTTTGGGAAGCTTT
AACCCTTTTGGTAAGAATTTCTTTTTTATATTCCTCAAACCAGGGTAAAC
TAAAACCAAAAGGGGTTTTTTTCCTTCCTTTAAAGCCGAATCTTTTCTCT
CCCGGACCATACCAAATTGGTTTAATCCAATTTTGAATTAAATTTTTGG
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