DY260570

Overview
NameDY260570
Unique NameDY260570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length949
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.519e-17
Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENP----GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K AP ++F+DE+D++ GR        G H+   +  N+ +V  DG  T D   ++V+AATNRP  LD A++R  R  R++ +  PD   R +I++V    ++LA DVDLE +A    G++G+DL+NL   AA
Sbjct:  240 FETAKKHAPCIIFIDEIDAV-GRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDG--IIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAA 373          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.519e-17
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K APS++F+DE+DS+  +RE     E  R++ ++ +   DGL  K +  V+V+ ATNRP  +D A+ R  R  R + + +PD   R +++R+     +L+ DVDLE IA    GY G+DL  LC  AA
Sbjct:  294 FEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGL--KSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAA 423          

HSP 2 Score: 77.411 bits (189), Expect = 1.331e-13
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+  +R +       A  ++ N+ +   DG+  K  + V ++ ATNRP  +D A++R  RL + + + LPD  +R +I +  L K  +A +VDL  +A    G+SG+D+  +C  A
Sbjct:  567 FDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK--KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRA 698          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.984e-17
Identity = 48/124 (38.71%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL-AKEELASDVDLEGIANMADGYSGSDL 369
            F LA +  PS++F+DE+DS+ G R    E EA R++K EF+V   G+   D + +LVL ATN P+ LD A+ RR  +R+ + LP+A  R  + R+ L + +   ++ D + +    DGYSG+D+
Sbjct:  220 FQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADI 341          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.984e-17
Identity = 65/208 (31.25%), Postives = 105/208 (50.48%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD-VRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 615
            F+ A K +P ++F+DE+D++ G R NP + + MR   N+ +V  DG   K  E ++V+AATN P  LD+A+VR  R  R ++V  PD   R +I+   + K   + DVDL  IA    G+SG+DL NL   AA                           L +++D  + + M+D +YA +++      +S  +++  +    Y EGG
Sbjct:  308 FAAAKKRSPCIIFMDEIDAIGGSR-NPKDQQYMRMTLNQLLVELDGF--KQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAA---------------------------LKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISDESRKLTAYHEGG 485          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.984e-17
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K APS++F+DE+DS+  +RE     E  R++ ++ +   DGL  K +  V+V+ ATNRP  +D A+ R  R  R + + +PD   R +++R+     +LA DVDLE I+    GY G+DL  LC  AA
Sbjct:  293 FEEAEKNAPSIIFIDEIDSIAPKREKTNG-EVERRIVSQLLTLMDGL--KSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAA 422          

HSP 2 Score: 79.7221 bits (195), Expect = 2.682e-14
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHE--AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+  +R N       A  ++ N+ +   DG+  K  + V ++ ATNRP  +D A++R  RL + + + LPD  +R  I +  L K  +A DVD+  +A    G+SG+D+  +C  A
Sbjct:  566 FDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAK--KTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRA 697          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.984e-17
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K APS++F+DE+DS+  +RE     E  R++ ++ +   DGL  K +  V+V+ ATNRP  +D A+ R  R  R + + +PD   R +++R+     +LA DVDLE I+    GY G+DL  LC  AA
Sbjct:  293 FEEAEKNAPSIIFIDEIDSIAPKREKTNG-EVERRIVSQLLTLMDGL--KSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAA 422          

HSP 2 Score: 77.7962 bits (190), Expect = 1.019e-13
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHE---AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A + AP V+F DE+DS+  +R      +   A  ++ N+ +   DG+  K  + V ++ ATNRP  +D A++R  RL + + + LPD  +R  I +  L K  +A DVD+  +A    G+SG+D+  +C  A
Sbjct:  566 FDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAK--KTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRA 698          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.591e-17
Identity = 64/208 (30.77%), Postives = 106/208 (50.96%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVD-VRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 615
            F+ A K +P ++F+DE+D++ G R NP + + M+   N+ +V  DG   K  E ++V+AATN P  LD+A+VR  R  R ++V  PD   R +I+   ++K   + DVDL  IA    G+SG+DL NL   AA                           L +++D  + + M+D +YA +++      +S  +++  +    Y EGG
Sbjct:  315 FAAAKKRSPCIIFMDEIDAIGGSR-NPKDQQYMKMTLNQLLVELDGF--KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAA---------------------------LKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISDESRKLTAYHEGG 492          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.591e-17
Identity = 51/133 (38.35%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A K APS++F+DE+DS+  +RE     E  R++ ++ +   DGL  K +  V+V+ ATNRP  +D A+ R  R  R + + +PD   R +++R+     +LA DVDLE ++    GY G+DL  LC  AA
Sbjct:  294 FEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGL--KSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAA 423          

HSP 2 Score: 79.7221 bits (195), Expect = 2.682e-14
Identity = 46/131 (35.11%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 381
            F  A + AP V+F DE+DS+  +R N       A  ++ N+ +   DG+  K  + V ++ ATNRP  +D A++R  RL + + + LPD  +R +I +  L K  +A DVDL  +A    G+SG+D+  +C
Sbjct:  567 FDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAK--KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEIC 695          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.384e-17
Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F  A + APS++F+DE+DS+  +RE   GE E  R++  + +   DGL  +    V+V+AATNRP  +D A+ R  R  R + + +PD   R++I+ +   K  LA DVDLE +A + +G+ G+DL+ LC  AA
Sbjct:  268 FEEAKENAPSIIFIDEIDSIAPKREEVTGEVE--RRVVAQLLALMDGLEARGD--VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAA 397          

HSP 2 Score: 88.5817 bits (218), Expect = 5.773e-17
Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 381
            F  A ++AP V+F DE+DS+  RR   G+     ++ ++ +   DGL  ++ + V+V+AATNRP  +D A++R  RL R + +  PD   R +I ++ L  + LA DV++E +A   +GYSG+D++ +C
Sbjct:  541 FRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGL--EELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVC 667          
BLAST of DY260570 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.384e-17
Identity = 49/133 (36.84%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 393
            F+   K +P+++F+DE+D++  +RE     E  +++ ++ +   DGL+T+    V+V+AATNRP  +D A+ R  R  R + + +PDA  R +I+R+     +L  DVDLE +AN   G+ G+DL +LC  AA
Sbjct:  295 FAECEKNSPAILFIDEIDAIAPKREK-AHGEVEKRIVSQLLTLMDGLKTR--AHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAA 424          

HSP 2 Score: 74.3294 bits (181), Expect = 1.127e-12
Identity = 47/134 (35.07%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    1 FSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 390
            F  A   AP V+F DE+DS+   R         A  ++ N+ +   DG+  K  + V ++ ATNRP  +D AV+R  RL + + + LPD  +R +I +  L K  L++D+DL  +A    G+SG+DL  +C  A
Sbjct:  568 FDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAK--KNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRA 699          
The following BLAST results are available for this feature:
BLAST of DY260570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
FTSH_AQUAE1.519e-1738.69Cell division protease ftsH homolog OS=Aquifex aeo... [more]
CDC48_SOYBN1.519e-1739.10Cell division cycle protein 48 homolog OS=Glycine ... [more]
VPS4B_MOUSE1.984e-1738.71Vacuolar protein sorting-associated protein 4B OS=... [more]
FTSH4_ORYSJ1.984e-1731.25Cell division protease ftsH homolog 4, mitochondri... [more]
CD48E_ARATH1.984e-1739.10Cell division control protein 48 homolog E OS=Arab... [more]
CD48A_ARATH1.984e-1739.10Cell division control protein 48 homolog A OS=Arab... [more]
FTSH5_ORYSJ2.591e-1730.77Cell division protease ftsH homolog 5, mitochondri... [more]
CD48D_ARATH2.591e-1738.35Cell division control protein 48 homolog D OS=Arab... [more]
Y1297_ARCFU3.384e-1739.55Cell division cycle protein 48 homolog AF_1297 OS=... [more]
TERA2_CAEEL3.384e-1736.84Transitional endoplasmic reticulum ATPase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260570 ID=DY260570; Name=DY260570; organism=Citrus clementina; type=EST; length=949bp
TTCTCTCTGGCCAGTAAAATTGCTCCAAGTGTTGTTTTTGTTGATGAGGT
TGACAGCATGTTAGGAAGACGGGAAAATCCAGGAGAGCATGAAGCTATGC
GTAAAATGAAGAATGAATTCATGGTTAACTGGGATGGTTTGCGCACAAAG
GATAAAGAACGAGTTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCT
TGATGAGGCTGTTGTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGC
CAGATGCCCCAAACAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAA
GAATTGGCATCTGATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGG
GTACTCTGGAAGTGATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTC
CCATACGGGAAATTTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTG
GCCGAGAATAGAGCTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCC
TCTGAAGATGGACGATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTG
TATCATCAGAGTCTACAAATATGAATGAGCTCCTTCAATGGAATGAACTA
TATGGAGAAGGTGGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTA
GAGGTGGTATCTCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTA
TCATCCTAAATGATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCT
GTTGGGCTGTCCCTTTTTCCTTGTAATAAATAAAGGTTTTGGGAAGCTTT
AACCCTTTTGGTAAGAATTTCTTTTTTATATTCCTCAAACCAGGGTAAAC
TAAAACCAAAAGGGGTTTTTTTCCTTCCTTTAAAGCCGAATCTTTTCTCT
CCCGGACCATACCAAATTGGTTTAATCCAATTTTGAATTAAATTTTTGG
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