DY260573

Overview
NameDY260573
Unique NameDY260573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length984
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: EDL18_ARATH (Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.246e-18
Identity = 62/233 (26.61%), Postives = 114/233 (48.93%), Query Frame = 1
Query:    1 VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKPP 699
            V    +  + K  F +L +R+ R  LV+ + L + QQ +G +A++ YA  + +  GF  S ++ ST++ G   +   ++ +  VDK GRR LLL +   M ++  +I +   ++      +L   F  + V +   +I  +A   G L W+I SE FP+  +    S+   V+   + ++  AF  +L     G F  F     +   F++ L+PETK + +EE+   + + P
Sbjct:  246 VMTKMVENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRKAGF--SVTIGSTLL-GLFMIPKAMIGVILVDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFICVTL---YIGTYAIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGAVGGLALLFIWLLVPETKGLSLEEIQASLIREP 472          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: EDL17_ARATH (Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.246e-18
Identity = 58/225 (25.78%), Postives = 108/225 (48.00%), Query Frame = 1
Query:    1 VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 675
            V    +  + K  F +L +R+ R  LV+ + L + QQ +G  A++ YA  +F+  GF  +     T + G   +   ++ +  VDK GRR LL+ +   M ++  ++ +   ++      +L     +L  I +  +I+ +A   G L W+I SE FP+  +    S+   V+   + ++  AF  +      G F  F+G       F++ L+PETK + +EE+
Sbjct:  242 VMTKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFSGSAAVISYASTIFRKAGFSVAIG---TTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGMSMTCMLLGVAFTLQKMQLLSELTP---ILSFICVMMYIATYAIGLGGLPWVIMSEIFPINIKVTAGSIVTLVSFSSSSIVTYAFNFLFEWSTQGTFFIFAGIGGAALLFIWLLVPETKGLSLEEI 460          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: GTR4_MOUSE (Solute carrier family 2, facilitated glucose transporter member 4 OS=Mus musculus GN=Slc2a4 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.239e-18
Identity = 65/218 (29.82%), Postives = 108/218 (49.54%), Query Frame = 1
Query:   58 RRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLL--EAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKPPWL 705
            R +R  L+IAV LQ+ QQ +GINA+ +Y+  +F++ G G  A  Y+T+  G VN + TLVS+  V++ GRR L L   AG+        +A++L  +V           + + ++ I  F++ F    GP+ W I +E F    R A  +V    N    F++   F  +       +FL F+  +L    F F  +PET+    ++++    + P L
Sbjct:  282 RTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFESAGVGQPA--YATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERV--------PAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIVGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLKVPETRGRTFDQISAAFRRTPSL 489          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: GTR1_LEIDO (Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.536e-18
Identity = 64/221 (28.96%), Postives = 114/221 (51.58%), Query Frame = 1
Query:   28 VKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGS-ASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAII---LGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKF-GIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 675
            V+  +R L+ R  R ++V++  LQI QQ +GIN IM+Y+ V+    GF  +   +  ++    +N L T V+I++VD+ GRR +LL +     +   VIAII   +G ++       ++    L + ++  F++ +A   G + W+I  E FP   R++  SV    N     +++Q F  ++      G F   SG + +   FV+F   ETK + +E++
Sbjct:  224 VRIDYRPLMARDMRFRVVLSSGLQIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNALFTAVAIFTVDRFGRRRMLLISVFGCLVLLVVIAIIGFFIGTRIS------YSVGGGLFLALLAVFLALYAPGIGCIPWVIMGEIFPTHLRTSAASVATMANWGANVLVSQVFPILMGAIGVGGTFTIISGLMALGCIFVYFFAVETKGLTLEQI 438          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: EDL11_ARATH (Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 7.231e-18
Identity = 56/225 (24.89%), Postives = 109/225 (48.44%), Query Frame = 1
Query:    1 VEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 675
            V    + ++ K  F ++ +++ R  LV+ + L + QQ +G + I +Y+  +F+  GF   +    ++I G   +   LV +  VD+ GRR LLL + + M +   +I +   ++  +   +L     + V + I  +   FA+  G L W+I SE FP+  + +  ++    +    + ++ AF  M      G F  F+    +   F++ L+PETK   +EE+
Sbjct:  241 VMTKMLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGF---SERLGSMIFGVFVIPKALVGLILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQQMNVLPEL---IPIFVFVNILVYFGCFAFGIGGLPWVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEWSAQGTFYIFAAVGGMSFIFIWMLVPETKGQSLEEL 459          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: GTR2_CHICK (Solute carrier family 2, facilitated glucose transporter member 2 OS=Gallus gallus GN=SLC2A2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.443e-18
Identity = 60/203 (29.56%), Postives = 105/203 (51.72%), Query Frame = 1
Query:   67 RPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 675
            R  +++A+ +QI QQ +GINAI +Y+  +F+  G G    +Y+T+  G VN + T++S++ V+K GRR L L   + M +S   +A+ +G+ +   S+     +  +V I +  F+  F    GP+ W I +E F    R A  +V    N    F++   F  +       +F+ F+  +L+   F +  +PETK    EE+
Sbjct:  313 RQAVIVALMVQISQQFSGINAIFYYSTNIFQRAGVG--QPVYATIGVGVVNTVFTVISVFLVEKAGRRSLFLAGLMGMLIS--AVAMTVGLVLL--SQFAWMSYVSMVAIFL--FVIFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFCNWACNFIVGMCFQYIADLCGPYVFVVFAVLLLVFFLFAYLKVPETKGKSFEEI 507          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: GTR4_BOVIN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Bos taurus GN=SLC2A4 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.233e-17
Identity = 70/248 (28.23%), Postives = 117/248 (47.18%), Query Frame = 1
Query:    4 EASRIAKEVKHPFRNLLKRR------------NRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLL--EAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKPPWL 705
            + S +  E+K   R L + R            +R  LVIA+ LQ+ QQ +GINA+ +Y+  +F++ G    A  Y+T+  G VN + TLVS++ V++ GRR L L   AG+        +A++L  +V           + + ++ I  F++ F    GP+ W I +E F    R A  +V    N    F+I   F  +       +FL F+  +L    F F  +PET+    ++++    + P L
Sbjct:  252 DVSEVLAELKEEKRKLERERPLSLLQLLGSHTHRQPLVIAIVLQLSQQLSGINAVFYYSTSIFESAGVEKPA--YATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERV--------PAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIIGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLKVPETRGRTFDQISAVFHRTPSL 489          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: HGT1_CANAL (High-affinity glucose transporter OS=Candida albicans GN=HGT1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.104e-17
Identity = 59/240 (24.58%), Postives = 115/240 (47.92%), Query Frame = 1
Query:   40 FRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILG---------------IKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETF-PLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWK---PPW 702
            +  L  ++   +   A+  QI+QQ TG+N +M+Y   +F+  G+ G+++L ++ I   +N   T+ ++Y +DKVGRR LL+     M   Q  +A ILG               I++ + ++    G     +     F+++FA++WG   W+  +E +        G +++   N +  F IA    +   +  +  ++ +  +   M+  V+F  PETK   +EE+ + +W+   P W
Sbjct:  267 YATLFTKKYIQRTFTAIFAQIWQQLTGMNVMMYYIVYIFQMAGYSGNSNLVASSIQYVINTCVTVPALYFIDKVGRRPLLIGGATMMMAFQFGLAGILGQYSIPWPDSGNDSVNIRIPEDNKSASKG----AIACCYLFVASFAFTWGVGIWVYCAEIWGDNRVAQRGNAISTSANWILNFAIAMYTPTGFKNISWKTYIIYGVFCFAMATHVYFGFPETKGKRLEEIGQ-MWEERVPAW 501          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: SNF3_YEAST (High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae GN=SNF3 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.748e-17
Identity = 68/220 (30.91%), Postives = 112/220 (50.91%), Query Frame = 1
Query:   52 LKRRNRPQLVI----AVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFV---IAQAFLSMLCH-FKFGIFLFFS-GWVLIMSCFVFFL-LPETKNVPIEEMTE 681
            +  ++RP+  +     +ALQ FQQ +GIN I +Y    F   G   S S   + IT AVNV+  +  ++ V+  GRR +L+  G+ M ++  ++AI+ G  +K          A +++  IC FI+AF+ +WG + W+I +E +PL  RS   ++    N L  F+   I    +    H    G  +FF  G +  M   V +L + ETK + +EE+ E
Sbjct:  344 ISSKSRPKQTLRMFTGIALQAFQQFSGINFIFYYGVNFFNKTGV--SNSYLVSFITYAVNVVFNVPGLFFVEFFGRRKVLVVGGVIMTIANFIVAIV-GCSLKT------VAAAKVMIAFICLFIAAFSATWGGVVWVISAELYPLGVRSKCTAICAAANWLVNFICALITPYIVDTGSHTSSLGAKIFFIWGSLNAMGVIVVYLTVYETKGLTLEEIDE 554          
BLAST of DY260573 vs. ExPASy Swiss-Prot
Match: EDL16_ARATH (Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.589e-17
Identity = 60/215 (27.91%), Postives = 105/215 (48.84%), Query Frame = 1
Query:   31 KHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEM 675
            K   ++L+ ++    ++I V+L +FQQ  GIN I FYA   F   GF  ++    T+    V V  T++    +DK GRR L++ +   +FL   +      +K +    +     AV  V++   +++AF+   GP+ W+I SE FP+  +    S+ V VN    + ++  F  ++     G F  +S +      FV  ++PETK   +EE+
Sbjct:  265 KARIQDLVSKKYGRSVIIGVSLMVFQQFVGINGIGFYASETFVKAGF--TSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIFLGCILTGTSFLLKGQSLLLEWVPSLAVGGVLI---YVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKMVPETKGKTLEEI 474          
The following BLAST results are available for this feature:
BLAST of DY260573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
EDL18_ARATH3.246e-1826.61Sugar transporter ERD6-like 18 OS=Arabidopsis thal... [more]
EDL17_ARATH3.246e-1825.78Sugar transporter ERD6-like 17 OS=Arabidopsis thal... [more]
GTR4_MOUSE4.239e-1829.82Solute carrier family 2, facilitated glucose trans... [more]
GTR1_LEIDO5.536e-1828.96Membrane transporter D1 OS=Leishmania donovani PE=... [more]
EDL11_ARATH7.231e-1824.89Sugar transporter ERD6-like 11 OS=Arabidopsis thal... [more]
GTR2_CHICK9.443e-1829.56Solute carrier family 2, facilitated glucose trans... [more]
GTR4_BOVIN1.233e-1728.23Solute carrier family 2, facilitated glucose trans... [more]
HGT1_CANAL2.104e-1724.58High-affinity glucose transporter OS=Candida albic... [more]
SNF3_YEAST2.748e-1730.91High-affinity glucose transporter SNF3 OS=Saccharo... [more]
EDL16_ARATH3.589e-1727.91Sugar transporter ERD6-like 16 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YP04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260573 ID=DY260573; Name=DY260573; organism=Citrus clementina; type=EST; length=984bp
GTTGAGGCTAGTCGTATAGCCAAAGAAGTAAAGCACCCTTTCAGAAATCT
GCTCAAGCGTAGGAACCGGCCCCAGCTTGTCATTGCTGTTGCCTTGCAGA
TCTTCCAGCAGTGTACAGGAATCAATGCGATCATGTTTTATGCCCCAGTC
CTGTTTAAAACGTTGGGATTTGGCGGCAGTGCTTCTCTTTACTCAACTGT
GATTACAGGGGCAGTTAACGTCCTCTCAACACTAGTATCAATCTACTCGG
TGGACAAAGTGGGACGTCGGATGCTATTACTCGAAGCTGGAATTCAAATG
TTCTTGTCTCAGACTGTGATAGCAATCATACTTGGAATTAAGGTTAAGGA
TCACTCGGAAGATTTACACACTGGCTTTGCCGTCCTAGTGGTTATTATGA
TTTGCACTTTCATCTCTGCCTTTGCTTGGTCTTGGGGACCTCTCGGATGG
CTGATTCCCAGCGAAACATTCCCGTTAGAGACGCGATCAGCTGGACAGAG
TGTTACTGTTTGTGTGAACTTGCTGTTCACTTTTGTGATAGCTCAGGCAT
TCCTTTCAATGCTCTGCCATTTCAAGTTCGGCATCTTCTTGTTCTTCTCC
GGTTGGGTTTTGATCATGTCATGCTTTGTGTTTTTCTTGCTCCCCGAGAC
AAAGAATGTGCCGATTGAAGAGATGACTGAAAGAGTGTGGAAACCGCCTT
GGTTGTGGAAAAATTTTATGGTGGACCATGGTTTTGATGATGATGAACCC
AAAAAAAAATGGGCCTCCCAATGGGTTTGAACCCGTTTCCCCATTGTAAA
TTTAAAAAAGGCTTTAAAAAAGGATGTTGCCAAAAAAAAAATTAAAACCT
TATTCCTTAAGGAAAAAAAAATATTGGGGGGCCGTCCCTTGGTCCCGGAA
GAAATAATTGGTCCAACCCTTTAAAAAAAAGGTTCCATCCCGGAACCTCC
CGGCCCCCCCTTTTTCCCACCAAGGGGAGTTTTC
back to top