DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2392_XANAC (UPF0061 protein XAC2392 OS=Xanthomonas axonopodis pv. citri GN=XAC2392 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 8.883e-51
Identity = 112/197 (56.85%), Postives = 130/197 (65.99%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L +D+   ++LPGDP   S  REV  A ++ V P+  V  P L+A S  +A  L LD  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE +     R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL L  TG     DMFY+G+P+ EPGA V R+APSF
Sbjct:    4 LRFDNRLRQQLPGDPEEGSRRREVSVA-WSAVLPTP-VAAPSLIAHSAEMAQVLGLDAAEIASAQFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGDAVVRDMFYDGHPQREPGAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2589_XANC5 (UPF0061 protein XCV2589 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=XCV2589 PE=3 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.160e-50
Identity = 110/197 (55.84%), Postives = 132/197 (67.01%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L++D+   ++LPGDP   +  REV  A ++ V P+  V  P L+A S  +A  L L+  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE +     R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL L  TG+    DMFY+G+P+ EPGA V R+APSF
Sbjct:    4 LHFDNRLRQQLPGDPEEGARRREV-GAAWSSVLPTP-VAAPYLIAHSAEMAQVLGLEAAEIASAQFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGTDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGEAVVRDMFYDGHPQREPGAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1992_XYLFT (UPF0061 protein PD_1992 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=PD_1992 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.584e-50
Identity = 111/197 (56.35%), Postives = 129/197 (65.48%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L +++ F+  LP DP      R+VL A +++V+P+  V  P L+A+S  VA  L  D +E   P F   FSG     G  PYA  YGGHQFG W GQLGDGR ITLGE+L      +ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LGIPTTRAL L  TG     DM Y+G+P  EP A V R+APSF
Sbjct:    4 LRFNNRFIDVLPCDPEVSLRSRQVLEA-WSRVAPTP-VPMPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGNALYTGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPTTRALSLIATGDTVIRDMLYDGHPAPEPSAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2619_XYLFA (UPF0061 protein XF_2619 OS=Xylella fastidiosa GN=XF_2619 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 9.821e-50
Identity = 111/197 (56.35%), Postives = 128/197 (64.97%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L +++ F+  LP DP      R+VL A ++ V+P+  V  P L+A+S  VA  L  D +E   P F   FSG     G  PYA  YGGHQFG W GQLGDGR ITLGE+L      +ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LGIPTTRAL L  TG     DM Y+G+P  EP A V R+APSF
Sbjct:    4 LRFNNRFIAVLPCDPEVSLRSRQVLEA-WSGVAPTP-VPVPCLLAYSSEVAAILNFDAEELVTPRFVEVFSGNALYPGMQPYAVNYGGHQFGQWVGQLGDGRVITLGELLGADGVYYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHHLGIPTTRALSLIATGDTVIRDMLYDGHPAPEPSAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y396_XANOP (UPF0061 protein PXO_00396 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=PXO_00396 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.314e-49
Identity = 108/200 (54.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +  L++D+   ++LPG     +  REV  A ++ V P+  V  P L+A S  +A  L LD  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSE+MH LG+PTTRAL L  TG     DMFY+G P+ EPGA V R+APSF
Sbjct:    1 MTQLHFDNRLRQQLPGYQEEGARRREV-RAAWSAVMPTP-VAAPYLIAHSAEMAHVLGLDASEVASAAFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGIDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSESMHHLGVPTTRALSLVGTGDAVVRDMFYDGRPQREPGAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2718_XANOR (UPF0061 protein XOO2718 OS=Xanthomonas oryzae pv. oryzae GN=XOO2718 PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 8.314e-49
Identity = 108/200 (54.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +  L++D+   ++LPG     +  REV  A ++ V P+  V  P L+A S  +A  L LD  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSE+MH LG+PTTRAL L  TG     DMFY+G P+ EPGA V R+APSF
Sbjct:    1 MTQLHFDNRLRQQLPGYQEEGARRREV-RAAWSAVMPTP-VAAPYLIAHSAEMAHVLGLDASEVASAAFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGIDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSESMHHLGVPTTRALSLVGTGDAVVRDMFYDGRPQREPGAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2563_XANOM (UPF0061 protein XOO2563 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=XOO2563 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.314e-49
Identity = 108/200 (54.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +  L++D+   ++LPG     +  REV  A ++ V P+  V  P L+A S  +A  L LD  E     F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSE+MH LG+PTTRAL L  TG     DMFY+G P+ EPGA V R+APSF
Sbjct:    1 MTQLHFDNRLRQQLPGYQEEGARRREV-RAAWSAVMPTP-VAAPYLIAHSAEMAHVLGLDASEVASAAFAQVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGIDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSESMHHLGVPTTRALSLVGTGDAVVRDMFYDGRPQREPGAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2793_FLAJ1 (UPF0061 protein Fjoh_2793 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=Fjoh_2793 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.562e-47
Identity = 102/200 (51.00%), Postives = 132/200 (66.00%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +++L  ++ F  ELP DP   +  R+V +  ++ V+P+ +  NP+L+  SE  A  + +  +E    +F   FSG   L    PYA CY GHQFG WAGQLGDGRAI L E+ N  +  + LQLKGAGKTPYSR ADGLAVLRSSIRE+LC+EAM+ LG+PTTR+L L  +G     D+ YNGNP  E GA V R+APSF
Sbjct:    1 MKNLKINNRFTAELPADPDLTNETRQVKNTAFSYVNPT-KPSNPKLIHASEETAALVGISKEEIHSEEFLNVFSGKEILPETQPYAMCYAGHQFGNWAGQLGDGRAINLTEVEN-NNTFYTLQLKGAGKTPYSRTADGLAVLRSSIREYLCAEAMYHLGVPTTRSLSLILSGDQVLRDILYNGNPAYEKGAVVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2147_CYTH3 (UPF0061 protein CHU_2147 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=CHU_2147 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 5.958e-47
Identity = 104/193 (53.89%), Postives = 124/193 (64.25%), Query Frame = 1
Query:  283 HSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            ++F    PGD   ++  R+     Y  V P+  V +PQL+AWS  VA+ L L   E   P+  L   G T      PYA CY GHQFG WAGQLGDGRAI+LG      S  +ELQLKGAG TPYSR +DG AVLRSS+RE+L SEAMH+LG+PTTRAL L +TG     DMFYNG+   EPGA V R+APSF
Sbjct:   11 NTFTETFPGDLSMNNTTRQTPGVLYCSVLPTP-VHHPQLLAWSADVAEMLGL---ESPVPEDVLILGGNTVNPTMKPYASCYAGHQFGNWAGQLGDGRAISLGFCSGKDSMEYELQLKGAGPTPYSRNSDGRAVLRSSLREYLMSEAMHYLGVPTTRALSLVSTGDAVLRDMFYNGHAAYEPGAVVLRVAPSF 199          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: SELO_MOUSE (Selenoprotein O OS=Mus musculus GN=Selo PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 2.768e-44
Identity = 107/208 (51.44%), Postives = 127/208 (61.06%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELP------GDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFER--PDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L  L +D+  +RELP      G   + + PR V  AC+++  P A +  P+LVA SE     L L+  E      +  LFFSG   L G  P A CY GHQFG +AGQLGDG A+ LGE+     ERWELQLKGAG TP+SR ADG  VLRSSIREFLCSEAM  LGIPTTRA    T+      D+FY+GNPK E    V RIAP+F
Sbjct:   46 LAGLRFDNRALRELPVETPPPGPEDSLATPRPVPGACFSRARP-APLRRPRLVALSEPALALLGLEASEEAEVEAEAALFFSGNALLPGTEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSESTVMRDVFYDGNPKYEKCTVVLRIAPTF 252          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y2392_XANAC8.883e-5156.85UPF0061 protein XAC2392 OS=Xanthomonas axonopodis ... [more]
Y2589_XANC51.160e-5055.84UPF0061 protein XCV2589 OS=Xanthomonas campestris ... [more]
Y1992_XYLFT2.584e-5056.35UPF0061 protein PD_1992 OS=Xylella fastidiosa (str... [more]
Y2619_XYLFA9.821e-5056.35UPF0061 protein XF_2619 OS=Xylella fastidiosa GN=X... [more]
Y396_XANOP8.314e-4954.00UPF0061 protein PXO_00396 OS=Xanthomonas oryzae pv... [more]
Y2718_XANOR8.314e-4954.00UPF0061 protein XOO2718 OS=Xanthomonas oryzae pv. ... [more]
Y2563_XANOM8.314e-4954.00UPF0061 protein XOO2563 OS=Xanthomonas oryzae pv. ... [more]
Y2793_FLAJ14.562e-4751.00UPF0061 protein Fjoh_2793 OS=Flavobacterium johnso... [more]
Y2147_CYTH35.958e-4753.89UPF0061 protein CHU_2147 OS=Cytophaga hutchinsonii... [more]
SELO_MOUSE2.768e-4451.44Selenoprotein O OS=Mus musculus GN=Selo PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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