DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y3959_PSEA6 (UPF0061 protein Patl_3959 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=Patl_3959 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.275e-30
Identity = 68/131 (51.91%), Postives = 86/131 (65.65%), Query Frame = 1
Query:  382 VENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTT 774
            V NPQLV  + ++ D+L+L    F +        G T       +AQ YGGHQFG W   LGDGR + LGE  +   + W+L LKGAG TPYSRFADG AVLRS++RE+L SEA+H +GIPT+RALCL T+
Sbjct:   23 VANPQLVEVNHTLRDALQLPASWFTQSSIMSMLFGNTSSFTTHSFAQKYGGHQFGGWNPDLGDGRGVLLGEAKDKFGKSWDLHLKGAGPTPYSRFADGRAVLRSTLREYLASEALHHMGIPTSRALCLITS 153          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SHIFL (UPF0061 protein ydiU OS=Shigella flexneri GN=ydiU PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.880e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQF +WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNAAG--VWGGETLLPGMSPLAQVYSGHQFVVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALCH (UPF0061 protein ydiU OS=Salmonella choleraesuis GN=ydiU PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.880e-30
Identity = 80/175 (45.71%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ   GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVCSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECO81 (UPF0061 protein ydiU OS=Escherichia coli O81 (strain ED1a) GN=ydiU PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.880e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          E GA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVESGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y965_RHOS4 (UPF0061 protein RHOS4_09650 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=RHOS4_09650 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.880e-30
Identity = 79/163 (48.47%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            P+A V  P+L+  +  +A+ L LDP   ER    +F SG     GA P AQ Y GHQFG ++ QLGDGRA+ +GEI +    R +LQLKG+G+TP+SR ADG A L   +RE+L  EAMH LGIPTTRAL    TG+   P +   G   E PGA + R+A S
Sbjct:   21 PAAPVPAPRLLRLNRPLAEELGLDPDLLEREGAEIF-SGRRLPEGAHPLAQAYAGHQFGGFSPQLGDGRALLIGEITDRAGRRRDLQLKGSGRTPFSRGADGKAALGPVLREYLVGEAMHGLGIPTTRALAAVATGE---PLLRQEG---ERPGAILTRVAAS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y687_RHOSK (UPF0061 protein RSKD131_0687 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=RSKD131_0687 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.880e-30
Identity = 79/163 (48.47%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            P+A V  P+L+  +  +A+ L LDP   ER    +F SG     GA P AQ Y GHQFG ++ QLGDGRA+ +GEI +    R +LQLKG+G+TP+SR ADG A L   +RE+L  EAMH LGIPTTRAL    TG+   P +   G   E PGA + R+A S
Sbjct:   21 PAAPVPAPRLLRLNRPLAEELGLDPDLLEREGAEIF-SGRRLPEGAHPLAQAYAGHQFGGFSPQLGDGRALLIGEITDRAGRRRDLQLKGSGRTPFSRGADGKAALGPVLREYLVGEAMHGLGIPTTRALAAVATGE---PLLRQEG---ERPGAILTRVAAS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2131_KLEP7 (UPF0061 protein KPN78578_21310 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=KPN78578_21310 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.880e-30
Identity = 82/175 (46.86%), Postives = 101/175 (57.71%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  ++N +L+  +  +A  L +    F        + G   L G  P AQ Y GHQFG WAGQLGDGR I LGE       R++  LKGAG TPYSR  DG AVLRS+IRE L SEAMH LGIPTTRAL + T+    TP        + EPGA + R+A S
Sbjct:   10 RDELPDFYTSLSPTP-LDNARLIWRNAPLAQQLGVPDALFAPESGAGVWGGEALLPGMSPLAQVYSGHQFGAWAGQLGDGRGILLGEQQLADGRRYDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHALGIPTTRALAMVTS---DTPVY----RERVEPGAMLMRVAES 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1035_RHOS1 (UPF0061 protein Rsph17029_1035 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=Rsph17029_1035 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.880e-30
Identity = 79/163 (48.47%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            P+A V  P+L+  +  +A+ L LDP   ER    +F SG     GA P AQ Y GHQFG ++ QLGDGRA+ +GEI +    R +LQLKG+G+TP+SR ADG A L   +RE+L  EAMH LGIPTTRAL    TG+   P +   G   E PGA + R+A S
Sbjct:   21 PAAPVPAPRLLRLNRPLAEELGLDPDLLEREGAEIF-SGRRLPEGAHPLAQAYAGHQFGGFSPQLGDGRALLIGEITDRAGRRRDLQLKGSGRTPFSRGADGKAALGPVLREYLVGEAMHGLGIPTTRALAAVATGE---PLLRQEG---ERPGAILTRVAAS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5402_METPB (UPF0061 protein Mpop_5402 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=Mpop_5402 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.067e-30
Identity = 78/168 (46.43%), Postives = 100/168 (59.52%), Query Frame = 1
Query:  355 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            + +V+P+A VE P+LV  + ++A  L LDP   E P+     SG     GA P A  Y GHQFG +  QLGDGRAI LGE++     R ++QLKG+G TP+SR  DG A L   +RE+L SEAMH LGIPTTRAL   TTG+    +          PGA + R+A S
Sbjct:   19 FARVAPTA-VEAPRLVRLNRTLALDLGLDPDRLESPEGLDVLSGRRVAEGAEPLAAAYAGHQFGQFVPQLGDGRAILLGEVVGRDGRRRDIQLKGSGPTPFSRRGDGRAALGPVLREYLVSEAMHALGIPTTRALAAVTTGEPVIRETVL-------PGAVLTRVASS 178          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECOL5 (UPF0061 protein ydiU OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.129e-29
Identity = 81/175 (46.29%), Postives = 103/175 (58.86%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          E GA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNSAG--VWGGENLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVESGAMLMRVAPS 174          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y3959_PSEA62.275e-3051.91UPF0061 protein Patl_3959 OS=Pseudoalteromonas atl... [more]
YDIU_SHIFL3.880e-3046.86UPF0061 protein ydiU OS=Shigella flexneri GN=ydiU ... [more]
YDIU_SALCH3.880e-3045.71UPF0061 protein ydiU OS=Salmonella choleraesuis GN... [more]
YDIU_ECO813.880e-3046.86UPF0061 protein ydiU OS=Escherichia coli O81 (stra... [more]
Y965_RHOS43.880e-3048.47UPF0061 protein RHOS4_09650 OS=Rhodobacter sphaero... [more]
Y687_RHOSK3.880e-3048.47UPF0061 protein RSKD131_0687 OS=Rhodobacter sphaer... [more]
Y2131_KLEP73.880e-3046.86UPF0061 protein KPN78578_21310 OS=Klebsiella pneum... [more]
Y1035_RHOS13.880e-3048.47UPF0061 protein Rsph17029_1035 OS=Rhodobacter spha... [more]
Y5402_METPB5.067e-3046.43UPF0061 protein Mpop_5402 OS=Methylobacterium popu... [more]
YDIU_ECOL51.129e-2946.29UPF0061 protein ydiU OS=Escherichia coli O6:K15:H3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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