DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: SELO_HUMAN (Selenoprotein O OS=Homo sapiens GN=SELO PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 3.615e-44
Identity = 106/208 (50.96%), Postives = 125/208 (60.10%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELP------GDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELD--PKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L  L +D+  +R LP      G     S PR V  AC+T+V P+  +  P+LVA SE     L L   P      +  LFFSG   L GA P A CY GHQFG +AGQLGDG A+ LGE+     ERWELQLKGAG TP+SR ADG  VLRSSIREFLCSEAM  LG+PTTRA    T+      D+FY+GNPK E    V R+A +F
Sbjct:   45 LAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTP-LRQPRLVALSEPALALLGLGAPPAREAEAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTF 251          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: SELO_DANRE (Selenoprotein O OS=Danio rerio GN=selo PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 5.220e-43
Identity = 102/225 (45.33%), Postives = 141/225 (62.67%), Query Frame = 1
Query:  223 GGDESKMTKNLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKE-FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSE-----------RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            G D+  ++ +  +LE L +D+  +++LP DP T+   R+V  +C+++V P+  ++NP+ VA S      L LD +E  + P  P + SG+  + G+ P A CY GHQFG +AGQLGDG A  LGE+     +           RWE+Q+KGAG TPYSR ADG  VLRSSIREFLCSEA+  LG+PTTRA  + T+      D+FY+GNP+ E  + V RIAPSF
Sbjct:   28 GMDDMGVSLSRSSLERLEFDNVALKKLPLDPSTEPGVRQVRGSCFSRVQPTP-LKNPEFVAVSAPALALLGLDAEEVLKDPLGPEYLSGSKVMPGSEPAAHCYCGHQFGQFAGQLGDGAACYLGEVKAPAGQSPELLRENPTGRWEIQVKGAGLTPYSRQADGRKVLRSSIREFLCSEAVFALGVPTTRAGSVVTSDSRVMRDIFYDGNPRMERCSVVLRIAPSF 251          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1944_BURCJ (UPF0061 protein BceJ2315_19440 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=BceJ2315_19440 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.590e-37
Identity = 79/133 (59.40%), Postives = 94/133 (70.68%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLAAPYVVGFSDEVAQLLDLPPTLAAQPGFAELFTGNPTRDWPANAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y6171_BURCA (UPF0061 protein Bcen_6171 OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_6171 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.300e-37
Identity = 79/133 (59.40%), Postives = 94/133 (70.68%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1908_BURCH (UPF0061 protein Bcen2424_1908 OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_1908 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.300e-37
Identity = 79/133 (59.40%), Postives = 94/133 (70.68%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPSIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y486_PSEF5 (UPF0061 protein PFL_0486 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_0486 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.534e-37
Identity = 96/202 (47.52%), Postives = 118/202 (58.42%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +KAL++L +D+ F R   GD            A  T V P   ++NP+LVA S      L+LDP   E P F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RALC+      G+    +    K+E GA V R+APS
Sbjct:    1 MKALDELTFDNRFARL--GD------------AFSTHVLPEP-LDNPRLVAASPGAMALLDLDPAVAETPVFAELFGGHKLWAEAEPRAMVYSGHQFGSYNPQLGDGRGLLLGEVYNQAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRALCV-----IGSDTPVW--REKQERGAMVLRLAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1931_BURCC (UPF0061 protein Bcenmc03_1931 OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_1931 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.534e-37
Identity = 79/133 (59.40%), Postives = 94/133 (70.68%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V +S+ VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLAAPYVVGFSDDVAQLLDLPPAIAAQPGFAELFAGNPTRDWPAHAMPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1924_BURPP (UPF0061 protein Bphyt_1924 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_1924 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.626e-36
Identity = 90/167 (53.89%), Postives = 106/167 (63.47%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            P+A +  P LV +S   A  L L+P     P F   FSG       A A+PYA  Y GHQFG+WAGQLGDGRA+ LGE+ +   +R+ELQLKGAG+TPYSR  DG AVLRSSIRE+LCSEAMH LGIPTTRALC+      G+           E  A V R+APSF
Sbjct:   41 PAAPLSAPYLVGFSAETAALLGLEPGLENDPGFAELFSGNLTREWPAEALPYASVYSGHQFGVWAGQLGDGRALGLGEVEH-NGQRFELQLKGAGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRALCV-----IGSDQPV--RRETVETAAVVTRVAPSF 199          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5209_BURS3 (UPF0061 protein Bcep18194_A5209 OS=Burkholderia sp. (strain 383) GN=Bcep18194_A5209 PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.124e-36
Identity = 79/133 (59.40%), Postives = 93/133 (69.92%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V +S  VA  L+L P    +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE       R+ELQLKG+G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLAAPYVVGFSGEVAQLLDLPPSIAAQPGFAELFAGNPTRDWPANAMPYASVYSGHQFGVWAGQLGDGRALTIGERTGTDGRRYELQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y3881_PSEU5 (UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (strain A1501) GN=PST_3881 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.774e-36
Identity = 95/202 (47.03%), Postives = 120/202 (59.41%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +K L  L++D+ F R   GD  +            T+VSP   +E P+LV  SE+    L+LDP E E+  F   FSG    + A P A  Y GHQFG +  QLGDGR + LGE++N   E W+L LKGAGKTPYSR  DG AVLRSSIREFL SE +H LGIP++RALC+      G+  + Y   P  E GA + R+APS
Sbjct:    1 MKTLTQLHFDNRFARL--GDTFS------------TQVSPQP-LEAPRLVVASEAAMALLDLDPAEAEQALFAELFSGHKIWSTAEPRAMVYSGHQFGSYNPQLGDGRGLLLGEVVNEAGEYWDLHLKGAGKTPYSRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCV-----TGSDTLVYRERP--ERGAMLLRLAPS 180          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
SELO_HUMAN3.615e-4450.96Selenoprotein O OS=Homo sapiens GN=SELO PE=2 SV=3[more]
SELO_DANRE5.220e-4345.33Selenoprotein O OS=Danio rerio GN=selo PE=2 SV=2[more]
Y1944_BURCJ5.590e-3759.40UPF0061 protein BceJ2315_19440 OS=Burkholderia cep... [more]
Y6171_BURCA7.300e-3759.40UPF0061 protein Bcen_6171 OS=Burkholderia cenocepa... [more]
Y1908_BURCH7.300e-3759.40UPF0061 protein Bcen2424_1908 OS=Burkholderia ceno... [more]
Y486_PSEF59.534e-3747.52UPF0061 protein PFL_0486 OS=Pseudomonas fluorescen... [more]
Y1931_BURCC9.534e-3759.40UPF0061 protein Bcenmc03_1931 OS=Burkholderia ceno... [more]
Y1924_BURPP1.626e-3653.89UPF0061 protein Bphyt_1924 OS=Burkholderia phytofi... [more]
Y5209_BURS32.124e-3659.40UPF0061 protein Bcep18194_A5209 OS=Burkholderia sp... [more]
Y3881_PSEU52.774e-3647.03UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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