DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5734_NOSP7 (UPF0061 protein Npun_F5734 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F5734 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.208e-17
Identity = 54/139 (38.85%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  376 AEVENPQ-LVAW-SESVADSLELDPKEFERPDFPLFFS---GATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTG 777
            A  E PQ ++ W ++++   L LDP+  +  DF   F    G  PL      A  Y G+QFG + GQLGDGR    G++     E ++   KG+G+TPYSR  DG+  L+  +RE L +EA+H LG+ T+R L +  TG
Sbjct:   37 AAAEFPQHILRWRNDALLPRLGLDPQVVKDEDFITAFGQFQGRKPLL-----ALRYHGYQFGEYNGQLGDGRGFLYGQVRATDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHHLGVRTSRCLTMIETG 170          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1028_ANAVT (UPF0061 protein Ava_1028 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1028 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.165e-16
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  385 ENPQL-VAW-SESVADSLELDPKEFERPDFPL---FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTG 777
            E PQL + W ++++   L LDP+     DF      F G  PL      A  Y G+QFG +   LGDGR    G++     E ++   KG+G+TPYSR  DG+  L+  +RE L +EA+H LG+ T+R L +  TG
Sbjct:   40 EFPQLTLRWRNDAILPRLGLDPQTVTDEDFITAFGLFQGRKPLL-----ALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTSRCLTMIETG 170          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2876_ANASP (UPF0061 protein all2876 OS=Anabaena sp. (strain PCC 7120) GN=all2876 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.699e-15
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  385 ENPQL-VAW-SESVADSLELDPKEFERPDFPL---FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTG 777
            E PQL + W ++++   L L+P+     DF      F G  PL      A  Y G+QFG +   LGDGR    G++     E ++   KG+G+TPYSR  DG+  L+  +RE L +EA+H LG+ T+R L +  TG
Sbjct:   40 EFPQLTLRWRNDAILPRLGLNPQIVTDEDFITAFGLFQGRKPLL-----ALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTSRCLTMIETG 170          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y596_GLOVI (UPF0061 protein gll0596 OS=Gloeobacter violaceus GN=gll0596 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.526e-15
Identity = 50/124 (40.32%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  412 ESVADSLELDPKEFERPDFPLFFSGATPLAGAVPY-AQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGK 780
            + V   L LDP       F   F      AG  P+ A  Y G+QFG +   LGDGR    G++  L  E ++   KG+G TPYSR  DG   L+  +RE L SEA+H LG+ T+R+L L  TG+
Sbjct:   51 DGVLRLLGLDPATVGEEHFIEAFGR---FAGRGPFLAMRYHGYQFGEYNPYLGDGRGFLYGQVRGLDGELYDFGTKGSGTTPYSRGGDGRLTLKGGVREVLASEALHHLGVRTSRSLSLIETGE 171          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1633_THEEB (UPF0061 protein tll1633 OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1633 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.026e-14
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  409 SESVADSLELDPKEFERPDFPLFFSGATPLAGAVPY-AQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGK 780
            ++++   + LDP E    DF   F       G  P+ A  Y G+QFG +   LGDGR    G+   +  + ++L  KG+G TPYSR  DG   L+  +RE L SE +H LG+ T R+L L  TG+
Sbjct:   40 NDALLPLMGLDPAEVTDADFIAAFG---QFQGREPFLAMRYHGYQFGEYNPHLGDGRGFLYGQFRGVDGQLYDLGTKGSGTTPYSRGGDGRLTLKGGVREVLASELLHRLGVRTFRSLSLVETGE 161          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YZ64_SYNY3 (UPF0061 protein sll1464 OS=Synechocystis sp. (strain PCC 6803) GN=sll1464 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.091e-14
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  430 LELDPKEFERPDFPLFFSGATPLAGAVPY-AQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTG 777
            L L+P + +  +F   F       G  P+ A  Y G+QFG +   LGDGR    G++  +  E ++   KG+G+TPYSR  DG   L+  +RE L +EA+H LG+ T+R L L  TG
Sbjct:   46 LGLEPSQVKDDNFVEAFG---LFHGVRPFLALRYHGYQFGEYNPNLGDGRGFLYGQVRGVNGELFDFGTKGSGQTPYSRGGDGRLTLKGGVREVLAAEALHRLGVKTSRCLSLVETG 159          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1476_TRIEI (UPF0061 protein Tery_1476 OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_1476 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.629e-13
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  526 YGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGK 780
            Y G+QFG +   LGDGR    G++  +  E ++   KG+G+TPYSR ADG   L+  +RE L +E +H  G+ T+R L L  TG+
Sbjct:   76 YHGYQFGEYNPYLGDGRGFLYGQVRGVDDELYDFGTKGSGRTPYSRSADGRLTLKGGVREVLAAEILHRHGVRTSRCLSLIETGE 160          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y041_SYNP6 (UPF0061 protein syc0041_c OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0041_c PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.254e-12
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  478 FSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGK 780
            F G +PL      A  Y G+QFG+++  LGDGR    G++       ++   KG+G+TPYSR  DG   L+  +RE L SE +  LG+ T R L L  TG+
Sbjct:   67 FQGRSPLL-----AMRYHGYQFGIYSPDLGDGRGFLYGQVRGRNGWLYDFGTKGSGRTPYSRGGDGKPTLKGGVREVLASEFLQRLGVRTGRCLSLIETGE 162          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1584_SYNE7 (UPF0061 protein Synpcc7942_1584 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1584 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.793e-12
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  478 FSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGK 780
            F G +PL      A  Y G+QFG++   LGDGR    G++       ++   KG+G+TPYSR  DG   L+  +RE L SE +  LG+ T R L L  TG+
Sbjct:   67 FQGRSPLL-----AMRYHGYQFGIYNPDLGDGRGFLYGQVRGRNGWLYDFGTKGSGRTPYSRGGDGKLTLKGGVREVLASEFLQRLGVRTGRCLSLIETGE 162          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y5734_NOSP72.208e-1738.85UPF0061 protein Npun_F5734 OS=Nostoc punctiforme (... [more]
Y1028_ANAVT4.165e-1638.24UPF0061 protein Ava_1028 OS=Anabaena variabilis (s... [more]
Y2876_ANASP2.699e-1537.50UPF0061 protein all2876 OS=Anabaena sp. (strain PC... [more]
Y596_GLOVI3.526e-1540.32UPF0061 protein gll0596 OS=Gloeobacter violaceus G... [more]
Y1633_THEEB1.026e-1437.60UPF0061 protein tll1633 OS=Thermosynechococcus elo... [more]
YZ64_SYNY35.091e-1438.46UPF0061 protein sll1464 OS=Synechocystis sp. (stra... [more]
Y1476_TRIEI5.629e-1342.35UPF0061 protein Tery_1476 OS=Trichodesmium erythra... [more]
Y041_SYNP61.254e-1239.60UPF0061 protein syc0041_c OS=Synechococcus sp. (st... [more]
Y1584_SYNE72.793e-1239.60UPF0061 protein Synpcc7942_1584 OS=Synechococcus e... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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