DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1019_THIDA (UPF0061 protein Tbd_1019 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=Tbd_1019 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.774e-36
Identity = 96/203 (47.29%), Postives = 115/203 (56.65%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +  LE L +D+ F R LP                Y +V P+  V +P LV +S      L+LD  E +RP+     +G   L G    A  Y GHQFG +  QLGDGRAI LGE+ N   E WE+QLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH L IPTTRAL +      G+    Y  +  EE  A V R+APSF
Sbjct:    1 MATLESLTFDNGFAR-LP-------------ETYYARVCPTP-VPDPYLVCYSPEALSLLDLDATELKRPETIETLAGNRLLPGMDAIAALYAGHQFGHYVPQLGDGRAILLGEVRNRAGEGWEIQLKGAGRTPYSRGGDGRAVLRSSIREFLCSEAMHALDIPTTRALAV-----VGSDHPVYRED--EETAALVTRLAPSF 181          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5674_BURM9 (UPF0061 protein BMA10229_A3374 OS=Burkholderia mallei (strain NCTC 10229) GN=BMA10229_A3374 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.054e-35
Identity = 82/154 (53.25%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  313 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            PR D+  +  L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL +
Sbjct:   24 PRDDAFQQ--LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAV 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2457_BURP1 (UPF0061 protein BURPS1710b_2457 OS=Burkholderia pseudomallei (strain 1710b) GN=BURPS1710b_2457 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.054e-35
Identity = 82/154 (53.25%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  313 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            PR D+  +  L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL +
Sbjct:   24 PRDDAFQQ--LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAV 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2336_BURP0 (UPF0061 protein BURPS1106A_2336 OS=Burkholderia pseudomallei (strain 1106a) GN=BURPS1106A_2336 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.054e-35
Identity = 82/154 (53.25%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  313 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            PR D+  +  L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL +
Sbjct:   24 PRDDAFQQ--LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAV 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2155_BURXL (UPF0061 protein Bxeno_A2155 OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A2155 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.054e-35
Identity = 89/167 (53.29%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            P+A +  P +V +S   A  L L+P     P F   FSG       A A+PYA  Y GHQFG+WAGQLGDGRA+ LGE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIRE+LCSEAMH LGIPTTRALC+      G+           E  A V R+APSF
Sbjct:   41 PAAPLSAPYVVGFSAETAALLGLEPGIENDPAFAELFSGNATREWPAEALPYASVYSGHQFGVWAGQLGDGRALGLGEVEH-GGRRFELQLKGAGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRALCV-----IGSDQPV--RRETVETAAVVTRVAPSF 199          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1422_BURPS (UPF0061 protein BPSL1422 OS=Burkholderia pseudomallei GN=BPSL1422 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.054e-35
Identity = 82/154 (53.25%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  313 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            PR D+  +  L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL +
Sbjct:   24 PRDDAFQQ--LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAV 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y558_PSEMY (UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina (strain ymp) GN=Pmen_0558 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.798e-35
Identity = 92/202 (45.54%), Postives = 117/202 (57.92%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +K L+ L +D+ F R   GD            A  T+V P   +E P+LV  S      L+LDP E +R +F   F+G      A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SE +H LGIP++RALC+ T+    TP        K+E  A V R+APS
Sbjct:    1 MKKLDQLTFDNRFARL--GD------------AFSTEVLPEP-IEQPRLVVASSDAMALLDLDPAEAQREEFAELFAGHKLWGEAEPRAMVYSGHQFGGYTPRLGDGRGLLLGEVVNAAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEHLHALGIPSSRALCVTTS---DTPVW----REKQERAAMVLRLAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2140_BURTA (UPF0061 protein BTH_I2140 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=BTH_I2140 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.348e-35
Identity = 85/162 (52.47%), Postives = 103/162 (63.58%), Query Frame = 1
Query:  301 LPGDPRTDSIPRE----VLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            LP    T + PR+     L A +    P+A +  P +V +S+  A  L LDP   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE L     R+ELQLKGAG+TPYSR  DG AVLRSSIRE+LCSEAMH LGIPTTRAL +
Sbjct:   14 LPDLAATLAAPRDGAFLQLGAAFLTRQPAAPLPAPYVVGFSDDAARMLGLDPALRDAPGFAGLFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGE-LEHDGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRALAV 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1877_BURM1 (UPF0061 protein Bmul_1366/BMULJ_01877 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=Bmul_1366 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.348e-35
Identity = 78/133 (58.65%), Postives = 93/133 (69.92%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V +S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG+G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLAAPYVVGFSDEVARLLGLPASLAAQPGFAELFAGNPTRDWPAEALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQLKGSGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YE35_SCHPO (UPF0061 protein C20G4.05c OS=Schizosaccharomyces pombe GN=SPAC20G4.05c PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.067e-35
Identity = 93/221 (42.08%), Postives = 129/221 (58.37%), Query Frame = 1
Query:  256 KALEDLNWDHSFVRELPGDPRTDSIPR------EVLHA--------CYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGAT-PLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKS-ERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSFFAL 870
            K L+DL    +F   LP DP   ++         +LH          +T ++PS +  N QL+A+S S   SL L+  E +   F     G+   +    P+AQCYGG+QFG WAGQLGDGR ++L E+ N ++ +R+E+Q+KGAG+TPYSRFADG AVLRSSIRE+LC EA++ LGIPTT+AL +         +         EP A V R+APS+  +
Sbjct:    3 KKLKDLPVSSTFTSNLPPDPLVPTVQAMKKADDRILHVPRFVEGGGLFTYLTPSLKA-NSQLLAYSPSSVKSLGLEESETQTEAFQQLVVGSNVDVNKCCPWAQCYGGYQFGDWAGQLGDGRVVSLCELTNPETGKRFEIQVKGAGRTPYSRFADGKAVLRSSIREYLCCEALYALGIPTTQALAISNL------EGVVAQRETVEPCAVVCRMAPSWIRI 216          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y1019_THIDA2.774e-3647.29UPF0061 protein Tbd_1019 OS=Thiobacillus denitrifi... [more]
Y5674_BURM91.054e-3553.25UPF0061 protein BMA10229_A3374 OS=Burkholderia mal... [more]
Y2457_BURP11.054e-3553.25UPF0061 protein BURPS1710b_2457 OS=Burkholderia ps... [more]
Y2336_BURP01.054e-3553.25UPF0061 protein BURPS1106A_2336 OS=Burkholderia ps... [more]
Y2155_BURXL1.054e-3553.29UPF0061 protein Bxeno_A2155 OS=Burkholderia xenovo... [more]
Y1422_BURPS1.054e-3553.25UPF0061 protein BPSL1422 OS=Burkholderia pseudomal... [more]
Y558_PSEMY1.798e-3545.54UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina... [more]
Y2140_BURTA2.348e-3552.47UPF0061 protein BTH_I2140 OS=Burkholderia thailand... [more]
Y1877_BURM12.348e-3558.65UPF0061 protein Bmul_1366/BMULJ_01877 OS=Burkholde... [more]
YE35_SCHPO3.067e-3542.08UPF0061 protein C20G4.05c OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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