DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1826_BURA4 (UPF0061 protein BamMC406_1826 OS=Burkholderia ambifaria (strain MC40-6) GN=BamMC406_1826 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.067e-35
Identity = 77/133 (57.89%), Postives = 92/133 (69.17%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V +S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQ+KG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLPAPYVVGFSDEVAQLLGLPASFAAQPGFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1440_BURMA (UPF0061 protein BMA1440 OS=Burkholderia mallei GN=BMA1440 PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 4.006e-35
Identity = 79/144 (54.86%), Postives = 97/144 (67.36%), Query Frame = 1
Query:  343 LHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            L A +    P+A +  P +V +S+  A  L L+P   + P F   F G         ++PYA  Y GHQFG+WAGQLGDGRA+T+GE+ +    R+ELQLKGAG+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL +
Sbjct:   32 LGAAFVTRLPAAPLPAPYVVGFSDDAARMLGLEPALRDAPGFAELFCGNPTRDWPQASLPYASVYSGHQFGVWAGQLGDGRALTIGELAH-DGRRYELQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALAV 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y4038_DECAR (UPF0061 protein Daro_4038 OS=Dechloromonas aromatica (strain RCB) GN=Daro_4038 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.833e-35
Identity = 89/172 (51.74%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  349 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC-LGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            A YT++ P    E P +V  S  VAD L L  +    P F   F+G   L G+ P A  Y GHQFG+WAGQLGDGRA  LG + N +   WE+QLKGAG+TPYSR ADG AVLRSSIREFLCSEAM  LG+PTTRALC +G        ++        E  A V R+AP F
Sbjct:   24 AFYTRLEPHPLPE-PYVVGVSTEVADLLGLPAELMNSPQFAEIFAGNRLLPGSEPLAAVYSGHQFGVWAGQLGDGRAHLLGGLRNDQGH-WEIQLKGAGRTPYSRGADGRAVLRSSIREFLCSEAMAGLGVPTTRALCVIGADQPVRREEI--------ETAALVARVAPGF 185          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2935_VARPS (UPF0061 protein Vapar_2935 OS=Variovorax paradoxus (strain S110) GN=Vapar_2935 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.833e-35
Identity = 91/172 (52.91%), Postives = 110/172 (63.95%), Query Frame = 1
Query:  349 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLF-FSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            A  T++ P+   + P  V  SE+ A  L L P ++ + +  L   +G  P+AG +P+A  Y GHQFG+WAGQLGDGRAI LGE         E+QLKGAG+TPYSR ADG AVLRSSIREFLCSEAMH LGIPTTRALC+      G+    Y   P  E  A V R+APSF
Sbjct:   27 AFLTELRPTPLPDPPYWVGHSEAAARLLGL-PADWRQSEGTLAALTGNLPVAGTLPFATVYSGHQFGVWAGQLGDGRAIMLGET----EGGLEVQLKGAGRTPYSRGADGRAVLRSSIREFLCSEAMHGLGIPTTRALCV-----TGSDARVYREMP--ETAAVVTRVAPSF 186          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1896_BURCM (UPF0061 protein Bamb_1896 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_1896 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.833e-35
Identity = 77/133 (57.89%), Postives = 91/133 (68.42%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V  S+ VA  L L      +P F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQ+KG G+TPYSR  DG AVLRSSIREFLCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLPAPYVVGCSDEVAQLLGLPASFATQPGFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2107_BORBR (UPF0061 protein BB2107 OS=Bordetella bronchiseptica GN=BB2107 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.165e-34
Identity = 92/190 (48.42%), Postives = 111/190 (58.42%), Query Frame = 1
Query:  292 VRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +++LP D    ++P E     YT++ P      P+L+  +   A  + LDP EF    F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+    +  WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTR+L L  +     P M        E  A V R+APSF
Sbjct:    6 LQDLPTDNSFAALPAEF----YTRLQPRPPAA-PRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PAGGWELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVS---DDPVM----RETVETAAVVTRMAPSF 182          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1919_BORPA (UPF0061 protein BPP1919 OS=Bordetella parapertussis GN=BPP1919 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.165e-34
Identity = 92/190 (48.42%), Postives = 111/190 (58.42%), Query Frame = 1
Query:  292 VRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +++LP D    ++P E     YT++ P      P+L+  +   A  + LDP EF    F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+    +  WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTR+L L  +     P M        E  A V R+APSF
Sbjct:    6 LQDLPTDNSFAALPAEF----YTRLQPRPPAA-PRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PAGGWELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVS---DDPVM----RETVETAAVVTRMAPSF 182          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1840_BURVG (UPF0061 protein Bcep1808_1840 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=Bcep1808_1840 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.165e-34
Identity = 77/133 (57.89%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  370 PSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL---AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRAL 759
            P+A +  P +V +S  VA  L L P       F   F+G       A A+PYA  Y GHQFG+WAGQLGDGRA+T+GE+      R+ELQLKG G+TPYSR  DG AVLRSSIRE+LCSEAMH LGIPTTRAL
Sbjct:   41 PAAPLPAPYVVGFSAEVAQLLGLPPSLAAHAQFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGSDGRRYELQLKGGGRTPYSRMGDGRAVLRSSIREYLCSEAMHHLGIPTTRAL 173          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y4511_AZOVD (UPF0061 protein Avin_45110 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=Avin_45110 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.988e-34
Identity = 90/202 (44.55%), Postives = 116/202 (57.43%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +K L +L +D+ F R   GD  +            T V+P   + +P+LV  S +    L+L+P   + P    + +G  P  GA P A  Y GHQFG +  QLGDGR + LGE++N   ERW+L LKGAGKTPYSR  DG AVLRSSIREFL SE +H LGIPT+RALC+  +    TP         EE  A + R+APS
Sbjct:    1 MKRLSELAFDNRFARL--GDTFS------------TAVTP-LPIASPRLVVASPAALALLDLEPAVADDPQLVEYCAGQCPWPGAEPRAMAYSGHQFGFYNPQLGDGRGLLLGEVINAAGERWDLHLKGAGKTPYSRMGDGRAVLRSSIREFLASEHLHALGIPTSRALCVTAS---DTPVW----RETEERAATLLRLAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5118_PSEPG (UPF0061 protein PputGB1_5118 OS=Pseudomonas putida (strain GB-1) GN=PputGB1_5118 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.391e-34
Identity = 87/171 (50.88%), Postives = 104/171 (60.82%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            +KAL+ L++D+ F R   GD            A  T+V P    E P+LV  SES    L+LDP   E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIPT+RALC+
Sbjct:    1 MKALDQLSFDNRFARL--GD------------AFSTQVLPEPIAE-PRLVVASESAMALLDLDPAHAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIPTSRALCV 156          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y1826_BURA43.067e-3557.89UPF0061 protein BamMC406_1826 OS=Burkholderia ambi... [more]
Y1440_BURMA4.006e-3554.86UPF0061 protein BMA1440 OS=Burkholderia mallei GN=... [more]
Y4038_DECAR6.833e-3551.74UPF0061 protein Daro_4038 OS=Dechloromonas aromati... [more]
Y2935_VARPS6.833e-3552.91UPF0061 protein Vapar_2935 OS=Variovorax paradoxus... [more]
Y1896_BURCM6.833e-3557.89UPF0061 protein Bamb_1896 OS=Burkholderia ambifari... [more]
Y2107_BORBR1.165e-3448.42UPF0061 protein BB2107 OS=Bordetella bronchiseptic... [more]
Y1919_BORPA1.165e-3448.42UPF0061 protein BPP1919 OS=Bordetella parapertussi... [more]
Y1840_BURVG1.165e-3457.89UPF0061 protein Bcep1808_1840 OS=Burkholderia viet... [more]
Y4511_AZOVD1.988e-3444.55UPF0061 protein Avin_45110 OS=Azotobacter vineland... [more]
Y5118_PSEPG3.391e-3450.88UPF0061 protein PputGB1_5118 OS=Pseudomonas putida... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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