DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y444_PSEFS (UPF0061 protein PFLU_0444 OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_0444 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.391e-34
Identity = 92/202 (45.54%), Postives = 114/202 (56.44%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +KAL++L +D+ F R   GD  +  +  E L A             P+LV  S +    L+LDP   E P F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LKGAG TPYSR  DG AVLRSSIREFL SEA+H LGIP++RALC+      G+    +    K+E GA V R+A S
Sbjct:    1 MKALDELTFDNRFARL--GDAFSTHVLPEPLDA-------------PRLVVASPAAMALLDLDPSVAETPVFAELFGGHKLWAEAEPRAMVYSGHQFGGYTPQLGDGRGLLLGEVYNEAGEHWDLHLKGAGMTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRALCV-----IGSDTPVW--REKQERGAMVLRMAHS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5028_PSESM (UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae pv. tomato GN=PSPTO_5028 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.554e-34
Identity = 93/202 (46.04%), Postives = 118/202 (58.42%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +KAL++L +D+ F R   GD            A  T V P   ++ P+LV  SES    L+L P++ E P F   FSG    A A P A  Y GHQFG +  +LGDGR + LGE+ N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RA C+ ++    TP        K+E  A V R+A S
Sbjct:    1 MKALDELVFDNRFARL--GD------------AFSTHVLPEP-IDAPRLVVASESALALLDLAPEQSELPLFAEIFSGHKLWAEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRAACVVSS---NTPVW----REKQEYAAMVLRLAQS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5068_PSEPK (UPF0061 protein PP_5068 OS=Pseudomonas putida (strain KT2440) GN=PP_5068 PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.683e-33
Identity = 85/171 (49.71%), Postives = 104/171 (60.82%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            +KAL+ L +D+ F R   GD            A  T+V P   + +P+LV  SES    L+LDP + E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGI T+RALC+
Sbjct:    1 MKALDQLTFDNRFARL--GD------------AFSTQVLPEP-IADPRLVVASESAMALLDLDPAQAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIATSRALCV 156          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y4941_PSEP1 (UPF0061 protein Pput_4941 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=Pput_4941 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.198e-33
Identity = 85/171 (49.71%), Postives = 104/171 (60.82%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            +KAL+ L +D+ F R   GD            A  T+V P   + +P+LV  SES    L+LDP + E P F   FSG      A P A  Y GHQFG +  +LGDGR + L E+LN   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGI T+RALC+
Sbjct:    1 MKALDQLTFDNRFARL--GD------------AFSTQVLPEP-IADPRLVVASESAMALLDLDPAQAELPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVLNDVGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIATSRALCV 156          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y444_PSEPF (UPF0061 protein Pfl01_0444 OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_0444 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.871e-33
Identity = 86/202 (42.57%), Postives = 113/202 (55.94%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +KAL++L +D+ F R        D+    VL            ++NP+LV  S +    L+LDP   +  +F   F G    A A P A  Y GHQFG +  QLGDGR + LGE+ N   E W+L LKGAG+TP+SR  DG AVLRSSIREFL SEA+H L IP++RA C+      G+    +    K+E  A V R+APS
Sbjct:    1 MKALDELTFDNRFAR------LGDAFSAHVL---------PEPIDNPRLVVASPAALALLDLDPAMADTQEFAELFGGHKLWADAEPRAMVYSGHQFGGYTPQLGDGRGLLLGEVYNAAGEHWDLHLKGAGQTPFSRMGDGRAVLRSSIREFLASEALHALNIPSSRAACV-----IGSDTPVW--REKQERAAMVLRLAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y398_PSEPW (UPF0061 protein PputW619_0398 OS=Pseudomonas putida (strain W619) GN=PputW619_0398 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.871e-33
Identity = 83/171 (48.54%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            +KAL+ L +D+ F R   GD            A  T+V P   + +P+LV  S+S    L+LDP + + P F   FSG     GA P A  Y GHQFG +  +LGDGR + L E++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGI T+RALC+
Sbjct:    1 MKALDQLTFDNRFARL--GD------------AFSTQVLPEP-IADPRLVIASKSAMALLDLDPAQADTPVFAELFSGHKLWEGADPRAMVYSGHQFGSYNPRLGDGRGLLLAEVVNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIATSRALCV 156          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2581_POLSJ (UPF0061 protein Bpro_2581 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=Bpro_2581 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.897e-33
Identity = 91/198 (45.96%), Postives = 113/198 (57.07%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL-GTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L W +SF R  PG               YT++ P+  + +P  V  S+++A  L L+    E  +     +G    AG+ P A  Y GHQFG+WAGQLGDGRAI LG+ L   +   E+QLKGAG+TPYSR  DG AVLRSSIREFL SEAMH LGIPTTRALC+ G+       D+        E  A V R +PSF
Sbjct:   19 LKWGNSFARLGPG--------------FYTELQPTP-LPSPYWVGRSQALARELGLEDHWLESAEALEVLTGNRSTAGSRPLASVYSGHQFGVWAGQLGDGRAILLGD-LQTPAGPQEIQLKGAGRTPYSRMGDGRAVLRSSIREFLASEAMHGLGIPTTRALCVTGSDAPVRREDI--------ETAAVVTRTSPSF 192          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y369_PSEE4 (UPF0061 protein PSEEN0369 OS=Pseudomonas entomophila (strain L48) GN=PSEEN0369 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.395e-33
Identity = 82/171 (47.95%), Postives = 106/171 (61.99%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 765
            +K+L+ L +D+ F R   GD            A  T+V P   + +P+LV  SE+    L+LDP + + P F   FSG      A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RALC+
Sbjct:    1 MKSLDQLVFDNRFARL--GD------------AFSTQVLPDP-IADPRLVVASEAAMALLDLDPAQADLPVFAELFSGHKLWEEADPRAMVYSGHQFGSYNPRLGDGRGLLLGEVVNDAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRALCV 156          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y863_MYXXD (UPF0061 protein MXAN_0863 OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_0863 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.352e-33
Identity = 85/202 (42.08%), Postives = 115/202 (56.93%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +  LE L +D+++ R LP                  +V PS    + +LV+ + +    L+L P+E +RP+F     GA PL G  P+A  Y GHQFG++  +LGDGRA+ LGE+ +    +W+L LKG G TP+SR  DG AVLRS+IRE+LC EAMH LGIPTTR L     G  G+    Y      E GA + R+APS
Sbjct:    1 MATLEQLRFDNTYAR-LPA-------------GFGARVHPSP-FPDAKLVSVNPAALKLLDLTPEEAQRPEFVAAMGGAKPLPGMEPFAMVYAGHQFGVYVPRLGDGRALLLGEVRDAAGAKWDLHLKGGGPTPFSRGGDGRAVLRSTIREYLCGEAMHGLGIPTTRGL-----GILGSQAPVY--REAVETGAMLVRMAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1192_THISH (UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=Tgr7_1192 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.425e-32
Identity = 88/199 (44.22%), Postives = 115/199 (57.79%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            LEDL + +S+ R LP              A + +  P A    P  VA++E  A  + L P+E  R +F   F+G  PL G  P +  Y GHQFG++  QLGDGRA+ LGE+   +  RWELQLKG+G T +SR ADG AVLRS+IRE+L SEAMH LG+PTTRAL +      G+    Y    + E  A + R+APS
Sbjct:    4 LEDLKFINSYAR-LP-------------EAFHDRPMP-APFPQPYRVAFNEKAAALIGLHPEEASRAEFVNAFTGQIPLTGMEPVSMIYAGHQFGVYVPQLGDGRALVLGEVQTPEGARWELQLKGSGPTRFSRGADGRAVLRSTIREYLASEAMHALGVPTTRALTI-----LGSDMPVY--RERVETAAILVRMAPS 180          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y444_PSEFS3.391e-3445.54UPF0061 protein PFLU_0444 OS=Pseudomonas fluoresce... [more]
Y5028_PSESM7.554e-3446.04UPF0061 protein PSPTO_5028 OS=Pseudomonas syringae... [more]
Y5068_PSEPK1.683e-3349.71UPF0061 protein PP_5068 OS=Pseudomonas putida (str... [more]
Y4941_PSEP12.198e-3349.71UPF0061 protein Pput_4941 OS=Pseudomonas putida (s... [more]
Y444_PSEPF2.871e-3342.57UPF0061 protein Pfl01_0444 OS=Pseudomonas fluoresc... [more]
Y398_PSEPW2.871e-3348.54UPF0061 protein PputW619_0398 OS=Pseudomonas putid... [more]
Y2581_POLSJ4.897e-3345.96UPF0061 protein Bpro_2581 OS=Polaromonas sp. (stra... [more]
Y369_PSEE46.395e-3347.95UPF0061 protein PSEEN0369 OS=Pseudomonas entomophi... [more]
Y863_MYXXD8.352e-3342.08UPF0061 protein MXAN_0863 OS=Myxococcus xanthus (s... [more]
Y1192_THISH1.425e-3244.22UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
back to top