DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y3040_BORPD (UPF0061 protein Bpet3040 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=Bpet3040 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.861e-32
Identity = 84/171 (49.12%), Postives = 101/171 (59.06%), Query Frame = 1
Query:  349 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            A YT+++P   +  P+L+  +E  A  + L        +F   FSG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+       WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTR+L L  +     P M        E  A V R++PSF
Sbjct:   21 AFYTRLAPQP-LTAPRLLHANEQAAALIGLSADALRSDEFLRVFSGQQPLPGGQTLAAVYSGHQFGVWAGQLGDGRAHLLGEVAG-PDGNWELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVS---DDPVM----RETVETAAIVTRMSPSF 182          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y485_PSE14 (UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_0485 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.174e-32
Identity = 88/202 (43.56%), Postives = 116/202 (57.43%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +KAL++L +D+ F R   GD  + S+  E              +E P+LV  S+S    L+L P++ + P F   FSG    + A P A  Y GHQFG +  +LGDGR + LGE  N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+H LGIP++RA C+ ++    TP         +E  A V R+A S
Sbjct:    1 MKALDELIFDNRFARL--GDAFSTSVLSE-------------PIETPRLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEAYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEALHALGIPSSRAGCVVSS---STPVW----RETQEHAAMVLRLAQS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y494_PSEU2 (UPF0061 protein Psyr_0494 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_0494 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.145e-32
Identity = 88/202 (43.56%), Postives = 116/202 (57.43%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +KAL++L +D+ F R   GD  + S+  E + A             PQLV  S+S    L+L P++ + P F   FSG    + A P A  Y GHQFG +  +LGDGR + LGE+ N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SE +H LGIP++RA C+ ++    TP         +E  A V R+A S
Sbjct:    1 MKALDELIFDNRFARL--GDAFSTSVLPEPIDA-------------PQLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEVLHALGIPSSRAGCVVSS---STPVW----RETQEHAAMVLRLAQS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALTY (UPF0061 protein ydiU OS=Salmonella typhimurium GN=ydiU PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.414e-32
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALPK (UPF0061 protein ydiU OS=Salmonella paratyphi A (strain AKU_12601) GN=ydiU PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.414e-32
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALPA (UPF0061 protein ydiU OS=Salmonella paratyphi A GN=ydiU PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.414e-32
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALAR (UPF0061 protein ydiU OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ydiU PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.235e-32
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DTPVQ----RETQEAGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2277_BORA1 (UPF0061 protein BAV2277 OS=Bordetella avium (strain 197N) GN=BAV2277 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.235e-32
Identity = 84/169 (49.70%), Postives = 100/169 (59.17%), Query Frame = 1
Query:  355 YTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            YT+++ +  +  P+L+  +   A  + LDP E     F    SG  PL G    A  Y GHQFG+WAGQLGDGRA  LGE+       WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTRAL L  +     P M        E  A V R++PSF
Sbjct:   23 YTRLA-AQPLGRPRLLHANAEAAALIGLDPAELHTQAFLEVASGQRPLPGGDTLAAVYSGHQFGVWAGQLGDGRAHLLGEVRG-PGGSWELQLKGAGLTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRALALVVS---DDPVM----RETRETAAIVTRMSPSF 182          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECO55 (UPF0061 protein ydiU OS=Escherichia coli (strain 55989 / EAEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.206e-31
Identity = 84/175 (48.00%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPATYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECO24 (UPF0061 protein ydiU OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.206e-31
Identity = 84/175 (48.00%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPATYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVEPGAMLMRVAPS 174          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y3040_BORPD1.861e-3249.12UPF0061 protein Bpet3040 OS=Bordetella petrii (str... [more]
Y485_PSE143.174e-3243.56UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae... [more]
Y494_PSEU24.145e-3243.56UPF0061 protein Psyr_0494 OS=Pseudomonas syringae ... [more]
YDIU_SALTY5.414e-3246.86UPF0061 protein ydiU OS=Salmonella typhimurium GN=... [more]
YDIU_SALPK5.414e-3246.86UPF0061 protein ydiU OS=Salmonella paratyphi A (st... [more]
YDIU_SALPA5.414e-3246.86UPF0061 protein ydiU OS=Salmonella paratyphi A GN=... [more]
YDIU_SALAR9.235e-3246.86UPF0061 protein ydiU OS=Salmonella arizonae (strai... [more]
Y2277_BORA19.235e-3249.70UPF0061 protein BAV2277 OS=Bordetella avium (strai... [more]
YDIU_ECO551.206e-3148.00UPF0061 protein ydiU OS=Escherichia coli (strain 5... [more]
YDIU_ECO241.206e-3148.00UPF0061 protein ydiU OS=Escherichia coli O139:H28 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
back to top