DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2395_RHOFD (UPF0061 protein Rfer_2395 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=Rfer_2395 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.206e-31
Identity = 93/208 (44.71%), Postives = 113/208 (54.33%), Query Frame = 1
Query:  244 TKNLKALE-DLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC-LGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            T+NL AL+  L W +SF               ++  + YT ++P   +  P  V  S S A  L L     + P+     +G  P+AG  P A  Y GHQFG WAGQLGDGRAI LGE   L     E+QLKG+G TPYSR  DG AVLRSSIREFLCSEAM  LGI T+RALC +G+        +        E  A V R+APSF
Sbjct:    5 TQNLTALDVGLAWRNSFA--------------QLGKSFYTPLAPWP-LPAPYWVGRSTSTARELGLSESWLDSPELLQVLTGNQPMAGTQPLASVYSGHQFGQWAGQLGDGRAILLGETGGL-----EVQLKGSGLTPYSRMGDGRAVLRSSIREFLCSEAMQGLGIATSRALCVVGSDAPIRRETV--------ETAAVVTRVAPSF 184          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5760_PSEA7 (UPF0061 protein PSPA7_5760 OS=Pseudomonas aeruginosa (strain PA7) GN=PSPA7_5760 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.575e-31
Identity = 89/203 (43.84%), Postives = 117/203 (57.64%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC-LGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +K+L+DL++D+ F R        D+   EVL        P AE   P+LV  S +    L+L  +  + P F   F G    + A P A  Y GHQFG +  +LGDGR + LGE+LN   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+  LGIP++RA C +G++    TP        K+E  A + R+APS
Sbjct:    1 MKSLDDLDFDNRFAR------LGDAFSTEVLP------DPIAE---PRLVVASPAALALLDLPAEASDEPVFAELFGGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVLNQAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALPALGIPSSRAACVIGSS----TPVW----REKKESAAMLLRLAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1735_HERAR (UPF0061 protein HEAR1735 OS=Herminiimonas arsenicoxydans GN=HEAR1735 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.575e-31
Identity = 88/184 (47.83%), Postives = 107/184 (58.15%), Query Frame = 1
Query:  349 ACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEI---LNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF-----FALWF 876
            A YT + P+  +  P LV  S S A  + LD  + +   F   F+G     G+ P +  Y GHQFG+WAGQLGDGRAI LG++     + S R ELQLKGAG TPYSR  DG AVLRSSIREFLCSEAM  LGIPTTRALC+  + +    +       + E  A   R+A SF     F  WF
Sbjct:   27 AHYTALMPTP-LPAPYLVCASASAAALIGLDFSDIDSAAFIETFTGNRIPDGSRPLSAVYSGHQFGVWAGQLGDGRAILLGDVPAPTMIPSGRLELQLKGAGLTPYSRMGDGRAVLRSSIREFLCSEAMAALGIPTTRALCVTGSDQIVLRE-------QRETAAVATRMAQSFVRFGSFEHWF 202          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALTI (UPF0061 protein ydiU OS=Salmonella typhi GN=ydiU PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.057e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGIWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALPB (UPF0061 protein ydiU OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydiU PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.057e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALNS (UPF0061 protein ydiU OS=Salmonella newport (strain SL254) GN=ydiU PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.057e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALHS (UPF0061 protein ydiU OS=Salmonella heidelberg (strain SL476) GN=ydiU PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.057e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALDC (UPF0061 protein ydiU OS=Salmonella dublin (strain CT_02021853) GN=ydiU PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.057e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALA4 (UPF0061 protein ydiU OS=Salmonella agona (strain SL483) GN=ydiU PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.057e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALEP (UPF0061 protein ydiU OS=Salmonella enteritidis PT4 (strain P125109) GN=ydiU PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.687e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDKLAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLAYGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y2395_RHOFD1.206e-3144.71UPF0061 protein Rfer_2395 OS=Rhodoferax ferrireduc... [more]
Y5760_PSEA71.575e-3143.84UPF0061 protein PSPA7_5760 OS=Pseudomonas aerugino... [more]
Y1735_HERAR1.575e-3147.83UPF0061 protein HEAR1735 OS=Herminiimonas arsenico... [more]
YDIU_SALTI2.057e-3146.29UPF0061 protein ydiU OS=Salmonella typhi GN=ydiU P... [more]
YDIU_SALPB2.057e-3146.29UPF0061 protein ydiU OS=Salmonella paratyphi B (st... [more]
YDIU_SALNS2.057e-3146.29UPF0061 protein ydiU OS=Salmonella newport (strain... [more]
YDIU_SALHS2.057e-3146.29UPF0061 protein ydiU OS=Salmonella heidelberg (str... [more]
YDIU_SALDC2.057e-3146.29UPF0061 protein ydiU OS=Salmonella dublin (strain ... [more]
YDIU_SALA42.057e-3146.29UPF0061 protein ydiU OS=Salmonella agona (strain S... [more]
YDIU_SALEP2.687e-3146.29UPF0061 protein ydiU OS=Salmonella enteritidis PT4... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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