DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALSV (UPF0061 protein ydiU OS=Salmonella schwarzengrund (strain CVM19633) GN=ydiU PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.509e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTP-LKNARLIWYNDELAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SALPC (UPF0061 protein ydiU OS=Salmonella paratyphi C (strain RKS4594) GN=ydiU PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.509e-31
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L A YT + P+  ++N +L+ +++ +A  L +    F+  +    + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL +  +    TP         +E GA + R+A S
Sbjct:   10 RDELPATYTALLPTL-LKNARLIWYNDKLAQQLAIPASLFDVTNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVAS---DTPVQ----RETQETGAMLMRLAQS 176          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECO5E (UPF0061 protein ydiU OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.583e-31
Identity = 83/175 (47.43%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECO57 (UPF0061 protein ydiU OS=Escherichia coli O157:H7 GN=ydiU PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.583e-31
Identity = 83/175 (47.43%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECOSE (UPF0061 protein ydiU OS=Escherichia coli (strain SE11) GN=ydiU PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.986e-31
Identity = 83/175 (47.43%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNAAG--VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVEPGAMLIRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5413_PSEA8 (UPF0061 protein PLES_54131 OS=Pseudomonas aeruginosa (strain LESB58) GN=PLES_54131 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.986e-31
Identity = 88/203 (43.35%), Postives = 118/203 (58.13%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC-LGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +K+L+DL++D+ F R L G   T+ +P            P AE   P+LV  S +    L+L  +  +   F   F G    + A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+  LGIP++RALC +G++    TP        K+E  A + R+APS
Sbjct:    1 MKSLDDLDFDNRFAR-LGGAFSTEVLP-----------DPIAE---PRLVVASPAALALLDLPAETSDEALFAELFGGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVINQAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALPALGIPSSRALCVIGSS----TPVW----REKKESAATLLRLAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y5023_PSEAE (UPF0061 protein PA5023 OS=Pseudomonas aeruginosa GN=PA5023 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.986e-31
Identity = 88/203 (43.35%), Postives = 118/203 (58.13%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC-LGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +K+L+DL++D+ F R L G   T+ +P            P AE   P+LV  S +    L+L  +  +   F   F G    + A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+  LGIP++RALC +G++    TP        K+E  A + R+APS
Sbjct:    1 MKSLDDLDFDNRFAR-LGGAFSTEVLP-----------DPIAE---PRLVVASPAALALLDLPAETSDEALFAELFGGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVINQAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALPALGIPSSRALCVIGSS----TPVW----REKKESAATLLRLAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2105_ENTS8 (UPF0061 protein ESA_02105 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ESA_02105 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.986e-31
Identity = 85/182 (46.70%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  313 PRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            PR  +  R+ L   YT+++P+  + N +L+  +  +A +LEL    F+       + G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE       + +  LKGAG TPYSR  DG AVLRS++REFL SEAMH LGIPTTRAL + T+    TP          E GA + RIA S
Sbjct:    5 PRFIATWRDELPGFYTELTPTP-LNNSRLLCHNAPLAQALELPETLFDYQGPAGVWGGETLLPGMAPLAQVYSGHQFGVWAGQLGDGRGILLGEQQLSDGCKLDWHLKGAGLTPYSRMGDGRAVLRSTVREFLASEAMHGLGIPTTRALTIVTS---DTPVR----RETTERGAMLMRIAES 178          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SHIB3 (UPF0061 protein ydiU OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ydiU PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.021e-30
Identity = 83/175 (47.43%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +LV  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLVWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETAEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLU (UPF0061 protein ydiU OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ydiU PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.021e-30
Identity = 83/175 (47.43%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L + P    + D  ++  G T L G  P AQ Y GHQFG+WAGQLGDGR I LGE         +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPGTYTALSPTP-LNNARLIWHNTELANTLSI-PSSLFKNDAGVW-GGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQRLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETVEPGAMLMRVAPS 174          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
YDIU_SALSV3.509e-3146.29UPF0061 protein ydiU OS=Salmonella schwarzengrund ... [more]
YDIU_SALPC3.509e-3146.29UPF0061 protein ydiU OS=Salmonella paratyphi C (st... [more]
YDIU_ECO5E4.583e-3147.43UPF0061 protein ydiU OS=Escherichia coli O157:H7 (... [more]
YDIU_ECO574.583e-3147.43UPF0061 protein ydiU OS=Escherichia coli O157:H7 G... [more]
YDIU_ECOSE5.986e-3147.43UPF0061 protein ydiU OS=Escherichia coli (strain S... [more]
Y5413_PSEA85.986e-3143.35UPF0061 protein PLES_54131 OS=Pseudomonas aerugino... [more]
Y5023_PSEAE5.986e-3143.35UPF0061 protein PA5023 OS=Pseudomonas aeruginosa G... [more]
Y2105_ENTS85.986e-3146.70UPF0061 protein ESA_02105 OS=Enterobacter sakazaki... [more]
YDIU_SHIB31.021e-3047.43UPF0061 protein ydiU OS=Shigella boydii serotype 1... [more]
YDIU_ECOLU1.021e-3047.43UPF0061 protein ydiU OS=Escherichia coli O17:K52:H... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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