DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1090_BORPE (UPF0061 protein BP1090 OS=Bordetella pertussis GN=BP1090 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.021e-30
Identity = 87/190 (45.79%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  292 VRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +++LP D    ++P E     YT++ P      P+L+  +   A  + LDP EF    F   FSG  PL G    A  Y GHQFG+WAGQLG+ R    G         WELQLKGAG TPYSR  DG AVLRSS+RE+L SEAMH LGIPTTR+L L  +     P M        E  A V R+APSF
Sbjct:    6 LQDLPTDNSFAALPAEF----YTRLQPRPPAA-PRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGEVRGPAGG---------WELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVS---DDPVM----RETVETAAVVTRMAPSF 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SHISS (UPF0061 protein ydiU OS=Shigella sonnei (strain Ss046) GN=ydiU PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.333e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETAEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLI (UPF0061 protein ydiU OS=Escherichia coli (strain K12) GN=ydiU PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.333e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETAEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECOLC (UPF0061 protein ydiU OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ydiU PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.333e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETAEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECOHS (UPF0061 protein ydiU OS=Escherichia coli O9:H4 (strain HS) GN=ydiU PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.333e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETAEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECODH (UPF0061 protein ydiU OS=Escherichia coli (strain K12 / DH10B) GN=ydiU PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.333e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETAEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_ECOBW (UPF0061 protein ydiU OS=Escherichia coli (strain K12 / BW2952) GN=ydiU PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.333e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNTELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETAEPGAMLMRVAPS 174          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y6641_PSEAB (UPF0061 protein PA14_66410 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=PA14_66410 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.333e-30
Identity = 88/203 (43.35%), Postives = 117/203 (57.64%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALC-LGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            +K+L+DL++D+ F R        D+   EVL        P AE   P+LV  S +    L+L  +  +   F   F G    + A P A  Y GHQFG +  +LGDGR + LGE++N   E W+L LKGAG+TPYSR  DG AVLRSSIREFL SEA+  LGIP++RALC +G++    TP        K+E  A + R+APS
Sbjct:    1 MKSLDDLDFDNRFAR------LGDAFSTEVLP------DPIAE---PRLVVASPAALALLDLPAETSDEALFAELFGGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVINQAGEHWDLHLKGAGQTPYSRMGDGRAVLRSSIREFLASEALPALGIPSSRALCVIGSS----TPVW----REKKESAATLLRLAPS 180          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y185_AERS4 (UPF0061 protein ASA_0185 OS=Aeromonas salmonicida (strain A449) GN=ASA_0185 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.742e-30
Identity = 73/122 (59.84%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  493 PLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            PL G  P AQ Y GHQFG ++ +LGDGRA+ LGE L    +RW+L LKGAGKTP+SRF DG AVLRSSIRE+L SEA+H LGIPTTRAL L      G+ +  Y    +EE GA V R APS
Sbjct:   58 PLPGMQPVAQVYAGHQFGGYSPRLGDGRALLLGEQLATDGQRWDLHLKGAGKTPFSRFGDGRAVLRSSIREYLASEALHALGIPTTRALVL-----VGSKEPVY--REQEETGATVLRTAPS 172          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: YDIU_SHIBS (UPF0061 protein ydiU OS=Shigella boydii serotype 4 (strain Sb227) GN=ydiU PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.275e-30
Identity = 82/175 (46.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  334 REVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPS 858
            R+ L   YT +SP+  + N +L+  +  +A++L +    F+       + G   L G  P AQ Y GHQFG+WAGQLGDGR I LGE L       +  LKGAG TPYSR  DG AVLRS+IRE L SEAMH+LGIPTTRAL + T+    +P          EPGA + R+APS
Sbjct:   10 RDELPETYTALSPTP-LNNARLIWHNIELANTLSIPSSLFKNGAG--VWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS---DSPVY----RETAEPGAMLMRVAPS 174          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y1090_BORPE1.021e-3045.79UPF0061 protein BP1090 OS=Bordetella pertussis GN=... [more]
YDIU_SHISS1.333e-3046.86UPF0061 protein ydiU OS=Shigella sonnei (strain Ss... [more]
YDIU_ECOLI1.333e-3046.86UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECOLC1.333e-3046.86UPF0061 protein ydiU OS=Escherichia coli (strain A... [more]
YDIU_ECOHS1.333e-3046.86UPF0061 protein ydiU OS=Escherichia coli O9:H4 (st... [more]
YDIU_ECODH1.333e-3046.86UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
YDIU_ECOBW1.333e-3046.86UPF0061 protein ydiU OS=Escherichia coli (strain K... [more]
Y6641_PSEAB1.333e-3043.35UPF0061 protein PA14_66410 OS=Pseudomonas aerugino... [more]
Y185_AERS41.742e-3059.84UPF0061 protein ASA_0185 OS=Aeromonas salmonicida ... [more]
YDIU_SHIBS2.275e-3046.86UPF0061 protein ydiU OS=Shigella boydii serotype 4... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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