DY260645

Overview
NameDY260645
Unique NameDY260645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.391e-18
Identity = 44/74 (59.46%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   93 HANGG--GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            H  GG  G WINA ATFY              YGNLYSQGYG  TAALSTALF+ GLSCG+C+E+ CVND +WC
Sbjct:   29 HHPGGHMGPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWC 102          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.078e-18
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  102 GGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC 287
            GGGGW +A ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C
Sbjct:   60 GGGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRC 121          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.643e-17
Identity = 42/70 (60.00%), Postives = 46/70 (65.71%), Query Frame = 3
Query:   96 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKW 305
            A GGG W +A ATFY              YGNLYSQGYG N AALSTALFN+G SCG+C+EIKCVN   W
Sbjct:   30 AYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGW 99          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.452e-17
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  108 GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            G W +A ATFY              YGNLYS GYGTNTAALST LFN+G +CGSCYE++C ND +WC
Sbjct:   27 GSWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWC 93          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.889e-17
Identity = 42/71 (59.15%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   96 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            A G GGW +A ATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C N    C
Sbjct:   18 AAGYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSC 88          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.889e-17
Identity = 42/71 (59.15%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   96 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            A G GGW +A ATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C N    C
Sbjct:   18 AAGYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSC 88          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.238e-16
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  102 GGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHK 302
            G G W    ATFY              YGNLYSQGYGT+TAALSTALFN GLSCGSCYE++C  DH+
Sbjct:   24 GLGQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHR 90          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 8.504e-16
Identity = 40/77 (51.95%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWCFFFFSKDTPTLF 344
            W +ARATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY+I CVND +WC     K T T F
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNF 124          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.474e-15
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWCFFFFSKDTPTLF 344
            W +ARATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYEI C  D +WC     K T T F
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNF 134          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.474e-15
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWCFFFFSKDTPTLF 344
            W +ARATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYEI C  D +WC     K T T F
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNF 128          
The following BLAST results are available for this feature:
BLAST of DY260645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EXPA5_ARATH2.391e-1859.46Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA5_ORYSJ4.078e-1866.13Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA7_ORYSJ2.643e-1760.00Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA2_ORYSJ3.452e-1758.21Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSJ5.889e-1759.15Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI5.889e-1759.15Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA6_ORYSJ2.238e-1659.70Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ARATH8.504e-1651.95Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP26_ARATH2.474e-1551.95Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH2.474e-1551.95Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260645 ID=DY260645; Name=DY260645; organism=Citrus clementina; type=EST; length=964bp
CTCTACTCTGCCTTTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCT
GGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAA
TGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTTTCTATGGTGGTGGCG
ATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGC
CAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAA
CGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAATGTGTTAATGACCACA
AATGGTGTTTTTTTTTTTTCAGTAAGGACACGCCTACACTTTTTTTTGGA
AGGGAAGACTTCTCATGATTATAAAAATAGTTCGATTGGAGCACTAAGCC
ATACAATTATTAAGATACATTGCCATTGATTTCTAATTATGTGATTCTAA
TTAAATAATAAATATAAAACAAGAATTAAAAACGTACTACAAACCTATAT
AATAGTACTAATATTTATAATTTACACATCTCTACTTAGTAAAGAGACAT
ACATATCAATCATTTATCTCGAAAAATTGTTGTAATGACTATAATAACAT
ATATAAATGTAAACTTAAATATTATAAATAACACTAAAATTAAAAATAAT
ATATATCTCTACTAAAATATCATTATTTCTATCCATCGCATAAATCCATA
AAATAATATAATCTATAACAACACTATAGACAAAAAAATAAAAATCTGAC
TAACATAATTACAAATTATATAAATATTTAGATAATGCATAATATTTATA
TCATAAATTAAATAATCAGTAAAATTTTATAGACAAGTGAATCCAAACCT
AAACTGGACTGTATCAGCACAAGCGATCGAACTACTAACGATCAATACAT
ACTAATAACAAAGCTACAGACAATTAAAAAAGAAAAATAAGTAAAATAGA
AAAAAACAATAACC
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