DY260645

Overview
NameDY260645
Unique NameDY260645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.231e-15
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWCFFFFSKDTPTLF 344
            W +ARATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY+I CV+D +WC     K T T F
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNF 131          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 3
Query:   93 HANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            +++  GGW    ATFY              YGNL+SQGYG  TAALSTALFN+G  CG+C+E++C +D +WC
Sbjct:   25 NSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWC 96          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.512e-15
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDHKWC 308
            GW+ A ATFY              YGNLY+QGYGT TAALSTALFN+GL+CG CY++ C    D  WC
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWC 100          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.604e-14
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:   96 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC 287
            A G  GW +  ATFY              YGNLYS GYGT+TAALSTALFNNG SCG+C+E++C
Sbjct:   21 AGGDSGWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRC 84          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.666e-14
Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWCFFFFSKDTPTLF 344
            GW + RATFY              YG+L+ QGYG  TAALSTALFNNG  CG+CYEI C +  +WC     K T T F
Sbjct:   89 GWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNF 166          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.024e-13
Identity = 36/68 (52.94%), Postives = 41/68 (60.29%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDHKWC 308
            GW+ A ATFY              YGNLY+ GY TNTAALSTALFN+G SCG CY+I C      +WC
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWC 94          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.950e-13
Identity = 37/70 (52.86%), Postives = 42/70 (60.00%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDH----KWC 308
            GW +  ATFY              YGNLY  GYGTNTAALS+ALFN+G SCG CY+I C  DH    +WC
Sbjct:   31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIAC--DHQAEPRWC 98          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 36/73 (49.32%), Postives = 41/73 (56.16%), Query Frame = 3
Query:   96 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDHKWC 308
            A    GW    ATFY              YGNLY+QGYGT TAALSTALF++G SCG CY + C    D +WC
Sbjct:   28 AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWC 100          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 36/73 (49.32%), Postives = 40/73 (54.79%), Query Frame = 3
Query:   96 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDHKWC 308
            A   GGW++  ATFY              YGNLY+QGYG   AALSTALFN G SCG CY I C      +WC
Sbjct:   21 AAAAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWC 93          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 36/67 (53.73%), Postives = 39/67 (58.21%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDH--KWC 308
            W  A ATFY              YGNLYSQGYGT  AALSTALFN+G SCG CY+I C      +WC
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWC 105          
The following BLAST results are available for this feature:
BLAST of DY260645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EXP25_ARATH3.231e-1550.65Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXPA2_ARATH4.220e-1548.61Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP13_ORYSJ5.512e-1554.41Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ORYSJ1.604e-1456.25Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH4.666e-1450.00Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP17_ARATH3.024e-1352.94Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP15_ORYSJ3.950e-1352.86Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ8.800e-1349.32Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ8.800e-1349.32Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ8.800e-1353.73Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260645 ID=DY260645; Name=DY260645; organism=Citrus clementina; type=EST; length=964bp
CTCTACTCTGCCTTTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCT
GGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAA
TGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTTTCTATGGTGGTGGCG
ATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGC
CAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAA
CGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAATGTGTTAATGACCACA
AATGGTGTTTTTTTTTTTTCAGTAAGGACACGCCTACACTTTTTTTTGGA
AGGGAAGACTTCTCATGATTATAAAAATAGTTCGATTGGAGCACTAAGCC
ATACAATTATTAAGATACATTGCCATTGATTTCTAATTATGTGATTCTAA
TTAAATAATAAATATAAAACAAGAATTAAAAACGTACTACAAACCTATAT
AATAGTACTAATATTTATAATTTACACATCTCTACTTAGTAAAGAGACAT
ACATATCAATCATTTATCTCGAAAAATTGTTGTAATGACTATAATAACAT
ATATAAATGTAAACTTAAATATTATAAATAACACTAAAATTAAAAATAAT
ATATATCTCTACTAAAATATCATTATTTCTATCCATCGCATAAATCCATA
AAATAATATAATCTATAACAACACTATAGACAAAAAAATAAAAATCTGAC
TAACATAATTACAAATTATATAAATATTTAGATAATGCATAATATTTATA
TCATAAATTAAATAATCAGTAAAATTTTATAGACAAGTGAATCCAAACCT
AAACTGGACTGTATCAGCACAAGCGATCGAACTACTAACGATCAATACAT
ACTAATAACAAAGCTACAGACAATTAAAAAAGAAAAATAAGTAAAATAGA
AAAAAACAATAACC
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