DY260645

Overview
NameDY260645
Unique NameDY260645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 35/67 (52.24%), Postives = 40/67 (59.70%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDH--KWC 308
            W+ A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C      +WC
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWC 118          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.960e-12
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  117 INARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDHKWC 308
            ++  ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG CY+I C  ++ KWC
Sbjct:   25 LSGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWC 89          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.560e-12
Identity = 36/68 (52.94%), Postives = 39/68 (57.35%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDHKWC 308
            G  N  ATFY              YG+LYS GYGT TAALSTALFN+G SCG CY I C    D +WC
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWC 92          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.344e-12
Identity = 36/68 (52.94%), Postives = 40/68 (58.82%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDHKWC 308
            GW  A ATFY              YG+LYS GYGTNTAALST LFN+G SCG CY I C    D ++C
Sbjct:   33 GWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFC 100          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.344e-12
Identity = 35/67 (52.24%), Postives = 39/67 (58.21%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDH--KWC 308
            W  A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C      +WC
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWC 100          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.704e-12
Identity = 35/67 (52.24%), Postives = 38/67 (56.72%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDH--KWC 308
            WI A ATFY              YGNLY QGYG   AALSTALFN+G +CG CY I C  D   +WC
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWC 93          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.704e-12
Identity = 34/62 (54.84%), Postives = 35/62 (56.45%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND 296
            GW+   ATFY              YGNLY QGYG N AALST LFNNG SCG CY I C  D
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYD 83          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.450e-12
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 3
Query:   96 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC 287
            A   G W +A ATFY              YGN Y QGYGT+TAALS  +F +GLSCG+C+E++C
Sbjct:   24 AAAAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRC 87          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.729e-12
Identity = 34/67 (50.75%), Postives = 39/67 (58.21%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDH--KWC 308
            W+ A ATFY              Y +LYSQGYGT  AALSTALFN+G SCG CY+I C      +WC
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWC 116          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.660e-11
Identity = 34/68 (50.00%), Postives = 38/68 (55.88%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDHKWC 308
            GW    ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG CY I C      +WC
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWC 93          
The following BLAST results are available for this feature:
BLAST of DY260645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EXP22_ORYSJ8.800e-1352.24Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ1.960e-1252.31Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH2.560e-1252.94Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA1_ORYSJ3.344e-1252.94Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP14_ORYSJ3.344e-1252.24Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ5.704e-1252.24Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP18_ORYSJ5.704e-1254.84Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ7.450e-1248.44Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ9.729e-1250.75Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ1.660e-1150.00Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260645 ID=DY260645; Name=DY260645; organism=Citrus clementina; type=EST; length=964bp
CTCTACTCTGCCTTTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCT
GGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAA
TGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTTTCTATGGTGGTGGCG
ATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGC
CAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAA
CGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAATGTGTTAATGACCACA
AATGGTGTTTTTTTTTTTTCAGTAAGGACACGCCTACACTTTTTTTTGGA
AGGGAAGACTTCTCATGATTATAAAAATAGTTCGATTGGAGCACTAAGCC
ATACAATTATTAAGATACATTGCCATTGATTTCTAATTATGTGATTCTAA
TTAAATAATAAATATAAAACAAGAATTAAAAACGTACTACAAACCTATAT
AATAGTACTAATATTTATAATTTACACATCTCTACTTAGTAAAGAGACAT
ACATATCAATCATTTATCTCGAAAAATTGTTGTAATGACTATAATAACAT
ATATAAATGTAAACTTAAATATTATAAATAACACTAAAATTAAAAATAAT
ATATATCTCTACTAAAATATCATTATTTCTATCCATCGCATAAATCCATA
AAATAATATAATCTATAACAACACTATAGACAAAAAAATAAAAATCTGAC
TAACATAATTACAAATTATATAAATATTTAGATAATGCATAATATTTATA
TCATAAATTAAATAATCAGTAAAATTTTATAGACAAGTGAATCCAAACCT
AAACTGGACTGTATCAGCACAAGCGATCGAACTACTAACGATCAATACAT
ACTAATAACAAAGCTACAGACAATTAAAAAAGAAAAATAAGTAAAATAGA
AAAAAACAATAACC
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