DY260645

Overview
NameDY260645
Unique NameDY260645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.831e-11
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDHKWC 308
            W +A ATFY              YGN+YS GYGTNT ALS+AL+ +G SCG+CY + C  +  +WC
Sbjct:   27 WTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWC 92          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.697e-11
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCV 290
            W  A ATFY              YGNLY+ GYGT+TAALST LF +G  CG+CY+++CV
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCV 95          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 33/66 (50.00%), Postives = 37/66 (56.06%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDHKWC 308
            W  A ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ I C     +WC
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWC 90          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 32/66 (48.48%), Postives = 37/66 (56.06%), Query Frame = 3
Query:  114 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDHKWC 308
            W  A ATFY              YGNLY+ GYG N AALS+ALFN+G  CG+CY I C  +   WC
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWC 88          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 3
Query:  105 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWCFF 314
            G  W  A ATFY              YGN+Y  GYG  T ALSTALFN G +CG C+++KCV+    C++
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYY 96          
The following BLAST results are available for this feature:
BLAST of DY260645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EXPA9_ORYSJ2.831e-1146.97Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP30_ORYSJ3.697e-1150.85Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXPA8_ORYSJ8.236e-1150.00Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP33_ORYSJ8.236e-1148.48Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH8.236e-1144.29Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260645 ID=DY260645; Name=DY260645; organism=Citrus clementina; type=EST; length=964bp
CTCTACTCTGCCTTTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCT
GGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAA
TGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTTTCTATGGTGGTGGCG
ATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGC
CAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAA
CGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAATGTGTTAATGACCACA
AATGGTGTTTTTTTTTTTTCAGTAAGGACACGCCTACACTTTTTTTTGGA
AGGGAAGACTTCTCATGATTATAAAAATAGTTCGATTGGAGCACTAAGCC
ATACAATTATTAAGATACATTGCCATTGATTTCTAATTATGTGATTCTAA
TTAAATAATAAATATAAAACAAGAATTAAAAACGTACTACAAACCTATAT
AATAGTACTAATATTTATAATTTACACATCTCTACTTAGTAAAGAGACAT
ACATATCAATCATTTATCTCGAAAAATTGTTGTAATGACTATAATAACAT
ATATAAATGTAAACTTAAATATTATAAATAACACTAAAATTAAAAATAAT
ATATATCTCTACTAAAATATCATTATTTCTATCCATCGCATAAATCCATA
AAATAATATAATCTATAACAACACTATAGACAAAAAAATAAAAATCTGAC
TAACATAATTACAAATTATATAAATATTTAGATAATGCATAATATTTATA
TCATAAATTAAATAATCAGTAAAATTTTATAGACAAGTGAATCCAAACCT
AAACTGGACTGTATCAGCACAAGCGATCGAACTACTAACGATCAATACAT
ACTAATAACAAAGCTACAGACAATTAAAAAAGAAAAATAAGTAAAATAGA
AAAAAACAATAACC
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